Sergey Koren

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Citations	42484	31662
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Adam M. PhillippySr. Investigator, National Human Genome Research Institute, NIHVerified email at nih.gov
Brian WalenzNHGRI, NIHVerified email at nih.gov
Todd J. TreangenAssistant Professor, Department of Computer Science, Rice UniversityVerified email at rice.edu
Arang RhieStaff Scientist, NHGRI, NIHVerified email at nih.gov
Nicholas BergmanDirector, National Bioforensic Analysis CenterVerified email at nbacc.dhs.gov
Mihai PopProfessor of Computer Science, University of Maryland, College ParkVerified email at umd.edu
Jason Rafe MillerAssistant Professor of Computer Science, Shepherd UniversityVerified email at shepherd.edu
Timothy P. SmithUSDA/ARS U.S. Meat Animal Research CenterVerified email at ars.usda.gov
Konstantin BerlinHead of AI at SophosVerified email at sophos.com
Brian OndovNational Library of MedicineVerified email at nih.gov
Granger G. Sutton IIIProfessor of Informatics, J. Craig Venter InstituteVerified email at jcvi.org
Derek BickhartResearch Geneticist, USDA ARSVerified email at ars.usda.gov
Erich JarvisRockefeller University, Duke University, HHMIVerified email at rockefeller.edu
Alexander T DiltheyInstitute of Medical Microbiology, University Hospital of DusseldorfVerified email at med.uni-duesseldorf.de
Evan EichlerProfessor of Genome Sciences, University of WashingtonVerified email at gs.washington.edu
Jay GhuryeGoogleVerified email at google.com
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at cs.jhu.edu
Chen-Shan Chin / Jason ChinGeneDXVerified email at genedx.com
John L. WilliamsUniversity of Adelaide / Università Cattolica del Sacro CuoreVerified email at adelaide.edu.au
Glennis LogsdonUniversity of WashingtonVerified email at uw.edu

Sergey Koren

Associate Investigator, NHGRI/NIH

Verified email at nih.gov - Homepage

Bioinformatics High-performance computing Genome Assembly Computational Biology Computer Science


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012	9162	2012
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation S Koren, BP Walenz, K Berlin, JR Miller, NH Bergman, AM Phillippy Genome research 27 (5), 722-736, 2017	4892	2017
A framework for human microbiome research nature 486 (7402), 215-221, 2012	2328	2012
Mash: fast genome and metagenome distance estimation using MinHash BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ... Genome biology 17 (1), 1-14, 2016	1922	2016
Nanopore sequencing and assembly of a human genome with ultra-long reads M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ... Nature biotechnology 36 (4), 338-345, 2018	1629	2018
Assembly algorithms for next-generation sequencing data JR Miller, S Koren, G Sutton Genomics 95 (6), 315-327, 2010	1485	2010
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes TJ Treangen, BD Ondov, S Koren, AM Phillippy Genome biology 15, 1-15, 2014	1264	2014
Hybrid error correction and de novo assembly of single-molecule sequencing reads S Koren, MC Schatz, BP Walenz, J Martin, JT Howard, G Ganapathy, ... Nature biotechnology 30 (7), 693-700, 2012	1131	2012
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing K Berlin, S Koren, CS Chin, JP Drake, JM Landolin, AM Phillippy Nature biotechnology 33 (6), 623-630, 2015	993	2015
The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022	960	2022
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ... Nature biotechnology 37 (10), 1155-1162, 2019	934	2019
GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome Research 22 (3), 557-567, 2012	848	2012
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013	761	2013
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly VA Schneider, T Graves-Lindsay, K Howe, N Bouk, HC Chen, PA Kitts, ... Genome research 27 (5), 849-864, 2017	693	2017
Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021	691	2021
Aggressive assembly of pyrosequencing reads with mates JR Miller, AL Delcher, S Koren, E Venter, BP Walenz, A Brownley, ... Bioinformatics 24 (24), 2818-2824, 2008	646	2008
The bonobo genome compared with the chimpanzee and human genomes K Prüfer, K Munch, I Hellmann, K Akagi, JR Miller, B Walenz, S Koren, ... Nature 486 (7404), 527-531, 2012	614	2012
Assemblathon 1: A competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011	607	2011
Telomere-to-telomere assembly of a complete human X chromosome KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ... Nature 585 (7823), 79-84, 2020	563	2020
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome DM Bickhart, BD Rosen, S Koren, BL Sayre, AR Hastie, S Chan, J Lee, ... Nature genetics 49 (4), 643-650, 2017	517	2017

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