| Functional connectomics spanning multiple areas of mouse visual cortex MICrONS Consortium, JA Bae, M Baptiste, CA Bishop, AL Bodor, ... BioRxiv, 2021.07. 28.454025, 2021 | 109 | 2021 |
| A community-developed open-source computational ecosystem for big neuro data JT Vogelstein, E Perlman, B Falk, A Baden, W Gray Roncal, ... Nature methods 15 (11), 846-847, 2018 | 64 | 2018 |
| Feature engineering with clinical expert knowledge: A case study assessment of machine learning model complexity and performance KD Roe, V Jawa, X Zhang, CG Chute, JA Epstein, J Matelsky, I Shpitser, ... Plos one 15 (4), e0231300, 2020 | 29 | 2020 |
| DotMotif: An open-source tool for connectome subgraph isomorphism search and graph queries JK Matelsky, EP Reilly, EC Johnson, J Stiso, DS Bassett, BA Wester, ... Scientific Reports 11 (1), 1-14, 2021 | 27 | 2021 |
| The Block Object Storage Service (bossDB): A cloud-native approach for petascale neuroscience discovery D Kleissas, R Hider, D Pryor, T Gion, P Manavalan, J Matelsky, A Baden, ... | 20 | 2017 |
| A large deformation diffeomorphic approach to registration of CLARITY images via mutual information KS Kutten, N Charon, MI Miller, JT Ratnanather, J Matelsky, AD Baden, ... Medical Image Computing and Computer Assisted Intervention− MICCAI 2017 …, 2017 | 20* | 2017 |
| The Brain Observatory Storage Service and Database (BossDB): A Cloud-Native Approach for Petascale Neuroscience Discovery R Hider Jr, D Kleissas, T Gion, D Xenes, J Matelsky, D Pryor, L Rodriguez, ... Frontiers in Neuroinformatics 16, 2022 | 17 | 2022 |
| Container-based clinical solutions for portable and reproducible image analysis J Matelsky, G Kiar, E Johnson, C Rivera, M Toma, W Gray-Roncal Journal of digital imaging 31, 315-320, 2018 | 17 | 2018 |
| Toward a scalable framework for reproducible processing of volumetric, nanoscale neuroimaging datasets EC Johnson, M Wilt, LM Rodriguez, R Norman-Tenazas, C Rivera, ... GigaScience 9 (12), giaa147, 2020 | 14* | 2020 |
| Context-dependent neocentromere activity in synthetic yeast chromosome VIII S Lauer, J Luo, L Lazar-Stefanita, W Zhang, LH McCulloch, V Fanfani, ... Cell Genomics 3 (11), 2023 | 9 | 2023 |
| A large language model-assisted education tool to provide feedback on open-ended responses JK Matelsky, F Parodi, T Liu, RD Lange, KP Kording arXiv preprint arXiv:2308.02439, 2023 | 8 | 2023 |
| An Integrated Toolkit for Extensible and Reproducible Neuroscience J Matelsky, L Rodriguez, D Xenes, T Gion, R Hider Jr, B Wester, ... International Conference of the IEEE Engineering in Medicine and Biology …, 2021 | 7* | 2021 |
| A substrate for modular, extensible data-visualization JK Matelsky, J Downs, HP Cowley, B Wester, W Gray-Roncal Big Data Analytics 5 (1), 1, 2020 | 6 | 2020 |
| CONFIRMS: A Toolkit for Scalable, Black Box Connectome Assessment and Investigation C Bishop, J Matelsky, M Wilt, J Downs, P Rivlin, S Plaza, B Wester, ... 2021 43rd Annual International Conference of the IEEE Engineering in …, 2021 | 5 | 2021 |
| Vimo-Visual Analysis of Neuronal Connectivity Motifs J Troidl, S Warchol, J Choi, J Matelsky, N Dhanyasi, X Wang, B Wester, ... IEEE Transactions on Visualization & Computer Graphics, 1-11, 2023 | 4 | 2023 |
| Scatterbrained: A flexible and expandable pattern for decentralized machine learning M Wilt, JK Matelsky, AS Gearhart arXiv preprint arXiv:2112.07718, 2021 | 4 | 2021 |
| Circuit motifs and graph properties of connectome development in C. elegans JK Matelsky, R Norman-Tenazas, F Davenport, EP Reilly, W Gray-Roncal bioRxiv, 2021.07. 11.451911, 2021 | 4 | 2021 |
| Neural Networks as Paths through the Space of Representations RD Lange, D Kwok, J Matelsky, X Wang, DS Rolnick, KP Kording arXiv preprint arXiv:2206.10999, 2022 | 3 | 2022 |
| CIRCUIT summer program: A computational neuroscience outreach experience for high-achieving undergraduates via sponsored research M Encarnacion, C Bishop, J Downs, N Drenkow, JK Matelsky, PK Rivlin, ... 2018 IEEE Integrated STEM Education Conference (ISEC), 45-52, 2018 | 3 | 2018 |
| Using machine learning on clinical data to identify unexpected patterns in groups of COVID-19 patients HP Cowley, MS Robinette, JK Matelsky, D Xenes, A Kashyap, NF Ibrahim, ... Scientific Reports 13 (1), 2236, 2023 | 2 | 2023 |
