| Computational design of fully overlapping coding schemes for protein pairs and triplets V Opuu, M Silvert, T Simonson Scientific reports 7 (1), 1-10, 2017 | 28 | 2017 |
| Physics-Based Computational Protein Design: An Update D Mignon, K Druart, E Michael, V Opuu, S Polydorides, F Villa, T Gaillard, ... The Journal of Physical Chemistry A 124 (51), 10637-10648, 2020 | 20 | 2020 |
| Adaptive landscape flattening allows the design of both enzyme: Substrate binding and catalytic power V Opuu, G Nigro, T Gaillard, E Schmitt, Y Mechulam, T Simonson PLoS computational biology 16 (1), e1007600, 2020 | 11 | 2020 |
| A physics-based energy function allows the computational redesign of a PDZ domain V Opuu, YJ Sun, T Hou, N Panel, EJ Fuentes, T Simonson Scientific Reports 10 (1), 1-9, 2020 | 7 | 2020 |
| High-throughput droplet-based analysis of influenza A virus genetic reassortment by single-virus RNA sequencing KY Chen, J Karuppusamy, MB O’Neill, V Opuu, M Bahin, S Foulon, ... Proceedings of the National Academy of Sciences 120 (6), e2211098120, 2023 | 6 | 2023 |
| Meet-U: educating through research immersion N Abdollahi, A Albani, E Anthony, A Baud, M Cardon, R Clerc, ... PLoS computational biology 14 (3), e1005992, 2018 | 6 | 2018 |
| RAFFT: Efficient prediction of RNA folding pathways using the fast Fourier transform V Opuu, NSC Merleau, V Messow, M Smerlak PLOS Computational Biology 18 (8), e1010448, 2022 | 4 | 2022 |
| Computational Design of PDZ-Peptide Binding N Panel, F Villa, V Opuu, D Mignon, T Simonson PDZ Mediated Interactions, 237-255, 2021 | 2 | 2021 |
| Enzyme redesign and genetic code expansion V Opuu, T Simonson Protein Engineering, Design and Selection, gzad017, 2023 | 1 | 2023 |
| Redesigning methionyl‐tRNA synthetase for β‐methionine activity with adaptive landscape flattening and experiments V Opuu, G Nigro, C Lazennec‐Schurdevin, Y Mechulam, E Schmitt, ... Protein Science 32 (9), e4738, 2023 | 1 | 2023 |
| Proteus software for physics-based protein design D Mignon, K Druart, V Opuu, S Polydorides, F Villa, T Gaillard, E Michael, ... bioRxiv, 2020 | 1 | 2020 |
| Hypothesis-driven interpretable neural network for interactions between genes S Wang, A Allauzen, P Nghe, V Opuu bioRxiv, 2024.04. 09.588719, 2024 | | 2024 |
| Global regulators facilitate adaptation to a phenotypic trade-off M Deyell, V Opuu, AD Griffiths, SJ Tans, P Nghe bioRxiv, 2023.09. 19.558433, 2023 | | 2023 |
| Discovery of RNA-Based Self-Reproducers From an Experimental-Computational Dialogue V Opuu, C Lambert, V Messow, NSC Merleau, M Smerlak, P Nghe The Astrobiology Science Conference (AbSciCon) 2022, 503-05, 2022 | | 2022 |
| Investigating graph neural network for RNA structural embedding V Opuu, H Bret Machine Learning for Structural Biology Workshop, NeurIPS 2022, 2022 | | 2022 |
| Knowledge-Based Unfolded State Model for Protein Design V Opuu, D Mignon, T Simonson Computational Peptide Science, 403-424, 2022 | | 2022 |
| Computational design of proteins and enzymes V Opuu Institut Polytechnique de Paris, 2020 | | 2020 |
| Biochemical and Structural Characterization of De Novo Designed PDZ Domains EJ Fuentes, YJ Sun, M Sternke, V Opuu, N Panel, D Barrick, T Simonson Biophysical Journal 116 (3), 320a, 2019 | | 2019 |
