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Pavel Sinitcyn
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The Perseus computational platform for comprehensive analysis of (prote) omics data
S Tyanova, T Temu, P Sinitcyn, A Carlson, MY Hein, T Geiger, M Mann, ...
Nature methods 13 (9), 731-740, 2016
66692016
Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry
M Bassani-Sternberg, E Bräunlein, R Klar, T Engleitner, P Sinitcyn, ...
Nature communications 7 (1), 13404, 2016
6562016
Visualization of LC‐MS/MS proteomics data in MaxQuant
S Tyanova, T Temu, A Carlson, P Sinitcyn, M Mann, J Cox
Proteomics 15 (8), 1453-1456, 2015
2632015
Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome
N Grassl, NA Kulak, G Pichler, PE Geyer, J Jung, S Schubert, P Sinitcyn, ...
Genome medicine 8, 1-13, 2016
2222016
The ER membrane protein complex interacts cotranslationally to enable biogenesis of multipass membrane proteins
MJ Shurtleff, DN Itzhak, JA Hussmann, NT Schirle Oakdale, EA Costa, ...
Elife 7, e37018, 2018
1942018
Computational methods for understanding mass spectrometry–based shotgun proteomics data
P Sinitcyn, JD Rudolph, J Cox
Annual Review of Biomedical Data Science 1, 207-234, 2018
1562018
MaxDIA enables library-based and library-free data-independent acquisition proteomics
P Sinitcyn, H Hamzeiy, F Salinas Soto, D Itzhak, F McCarthy, C Wichmann, ...
Nature biotechnology 39 (12), 1563-1573, 2021
1492021
Global detection of human variants and isoforms by deep proteome sequencing
P Sinitcyn, AL Richards, RJ Weatheritt, DR Brademan, H Marx, ...
Nature biotechnology 41 (12), 1776-1786, 2023
702023
MaxQuant goes linux
P Sinitcyn, S Tiwary, J Rudolph, P Gutenbrunner, C Wichmann, Ş Yılmaz, ...
Nature methods 15 (6), 401-401, 2018
412018
Progress and challenges in mass spectrometry-based analysis of antibody repertoires
I Snapkov, M Chernigovskaya, P Sinitcyn, K Lê Quý, TA Nyman, V Greiff
Trends in Biotechnology 40 (4), 463-481, 2022
332022
A novel uORF-based regulatory mechanism controls translation of the human MDM2 and eIF2D mRNAs during stress
KA Akulich, PG Sinitcyn, DS Makeeva, DE Andreev, IM Terenin, ...
Biochimie 157, 92-101, 2019
142019
Translatome and transcriptome analysis of TMA20 (MCT-1) and TMA64 (eIF2D) knockout yeast strains
DS Makeeva, AS Lando, A Anisimova, AA Egorov, MD Logacheva, ...
Data in brief 23, 103701, 2019
112019
Deep and fast label-free Dynamic Organellar Mapping
JP Schessner, V Albrecht, AK Davies, P Sinitcyn, GHH Borner
Nature Communications 14 (1), 5252, 2023
72023
MaxQuant module for the identification of genomic variants propagated into peptides
P Sinitcyn, M Gerwien, J Cox
Proteomics in Systems Biology: Methods and Protocols, 339-347, 2022
62022
The one hour human proteome
LR Serrano, TM Peters-Clarke, TN Arrey, E Damoc, ML Robinson, ...
Molecular & Cellular Proteomics 23 (5), 2024
42024
Fast and deep Phosphoproteome analysis with the orbitrap astral mass spectrometer
NM Lancaster, P Sinitcyn, P Forny, TM Peters-Clarke, C Fecher, AJ Smith, ...
bioRxiv, 2023.11. 21.568149, 2023
42023
Multi-targeted therapy resistance via drug-induced secretome fucosylation
MBD Aldonza, J Cha, I Yong, J Ku, P Sinitcyn, D Lee, RE Cho, ...
Elife 12, e75191, 2023
12023
An accurate large-scale human E3 ligase concentration map for next-generation TPD-based precision medicine created by MaxQuantAtlas
D Ferretti, Y Shi, P Sinitcyn, S Tiwary, C Browne, S Rusin, E Kuhn, ...
Molecular & Cellular Proteomics 21 (8), S55-S55, 2022
2022
Development of computational methods for the analysis of proteomics and next generation sequencing data
P Sinitcyn
lmu, 2021
2021
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Articles 1–19