| Evidence for network evolution in an Arabidopsis interactome map Arabidopsis Interactome Mapping Consortium Science 333 (6042), 601-607, 2011 | 746 | 2011 |
| Uncovering Biological Network Function via Graphlet Degree Signatures T Milenkovic, N Przulj Cancer Informatics 6, 257–273, 2008 | 386 | 2008 |
| Topological network alignment uncovers biological function and phylogeny O Kuchaiev, T Milenković, V Memišević, W Hayes, N Pržulj Journal of the Royal Society Interface 7 (50), 1341-1354, 2010 | 378 | 2010 |
| Optimal network alignment with graphlet degree vectors T Milenković, WL Ng, W Hayes, N Pržulj Cancer informatics 9, CIN. S4744, 2010 | 232 | 2010 |
| MAGNA: Maximizing Accuracy in Global Network Alignment V Saraph, T Milenkovic Bioinformatics 30 (20), 2931-2940, 2014 | 166 | 2014 |
| Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis C Guerrero, T Milenković, N Pržulj, P Kaiser, L Huang Proceedings of the National Academy of Sciences 105 (36), 13333, 2008 | 153 | 2008 |
| GraphCrunch: a tool for large network analyses T Milenković, J Lai, N Pržulj BMC bioinformatics 9 (1), 1-11, 2008 | 149 | 2008 |
| Dominating biological networks T Milenković, V Memišević, A Bonato, N Pržulj PloS one 6 (8), e23016, 2011 | 122 | 2011 |
| MAGNA++: Maximizing Accuracy in Global Network Alignment via both node and edge conservation V Vijayan, V Saraph, T Milenković Bioinformatics 31 (14), 2409-2411, 2015 | 120 | 2015 |
| Systems-level cancer gene identification from protein interaction network topology applied to melanogenesis-related functional genomics data T Milenković, V Memišević, AK Ganesan, N Pržulj Journal of the Royal Society Interface 7 (44), 423-437, 2010 | 107 | 2010 |
| Dynamic networks reveal key players in aging FE Faisal, T Milenković Bioinformatics 30 (12), 1721-1729, 2014 | 93 | 2014 |
| Exploring the structure and function of temporal networks with dynamic graphlets Y Hulovatyy, H Chen, T Milenkovic Bioinformatics 31 (12), i171-i180, 2015 | 81 | 2015 |
| Survey of local and global biological network alignment: the need to reconcile the two sides of the same coin PH Guzzi, T Milenković Briefings in bioinformatics 19 (3), 472-481, 2018 | 75 | 2018 |
| The post-genomic era of biological network alignment FE Faisal, L Meng, J Crawford, T Milenković EURASIP Journal on Bioinformatics and Systems Biology 2015 (1), 1-19, 2015 | 73 | 2015 |
| Global network alignment in the context of aging FE Faisal, H Zhao, T Milenković IEEE/ACM Transactions on Computational Biology and Bioinformatics 12 (1), 40-52, 2014 | 73* | 2014 |
| Graphlet-based edge clustering reveals pathogen-interacting proteins RW Solava, RP Michaels, T Milenković Bioinformatics 28 (18), i480-i486, 2012 | 70 | 2012 |
| Simultaneous Optimization of Both Node and Edge Conservation in Network Alignment via WAVE Y Sun, J Crawford, J Tang, T Milenkovic In Proceedings of the Workshop on Algorithms in Bioinformatics (WABI …, 2015 | 65 | 2015 |
| Local versus global biological network alignment L Meng, A Striegel, T Milenkovic Bioinformatics 32 (20), 3155-3164, 2016 | 58 | 2016 |
| Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy RM Kaake, T Milenkovic, N Przulj, P Kaiser, L Huang Journal of proteome research 9 (4), 2016-2029, 2010 | 58 | 2010 |
| Proper evaluation of alignment-free network comparison methods ÖN Yaveroğlu, T Milenković, N Pržulj Bioinformatics 31 (16), 2697-2704, 2015 | 53 | 2015 |
