|Conformational and physicochemical DNA features specific for transcription factor binding sites.|
JV Ponomarenko, MP Ponomarenko, AS Frolov, DG Vorobyev, ...
Bioinformatics (Oxford, England) 15 (7), 654-668, 1999
|Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins.|
MP Ponomarenko, JV Ponomarenko, AS Frolov, NL Podkolodny, ...
Bioinformatics (Oxford, England) 15 (7), 687-703, 1999
|rSNP_Guide: An integrated database‐tools system for studying SNPs and site‐directed mutations in transcription factor binding sites|
JV Ponomarenko, GV Orlova, TI Merkulova, EV Gorshkova, ON Fokin, ...
Human mutation 20 (4), 239-248, 2002
|An experimental verification of the predicted effects of promoter TATA-box polymorphisms associated with human diseases on interactions between the TATA boxes and TATA-binding …|
L Savinkova, I Drachkova, T Arshinova, P Ponomarenko, M Ponomarenko, ...
PloS one 8 (2), e54626, 2013
|TATA box polymorphisms in human gene promoters and associated hereditary pathologies|
LK Savinkova, MP Ponomarenko, PM Ponomarenko, IA Drachkova, ...
Biochemistry (Moscow) 74 (2), 117-129, 2009
|Point mutations within 663–666 bp of intron 6 of the human TDO2 gene, associated with a number of psychiatric disorders, damage the YY-1 transcription factor binding site|
GV Vasiliev, VM Merkulov, VF Kobzev, TI Merkulova, MP Ponomarenko, ...
FEBS letters 462 (1-2), 85-88, 1999
|Oligonucleotide frequency matrices addressed to recognizing functional DNA sites.|
MP Ponomarenko, JV Ponomarenko, AS Frolov, OA Podkolodnaya, ...
Bioinformatics (Oxford, England) 15 (7), 631-643, 1999
|rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations|
JV Ponomarenko, TI Merkulova, GV Vasiliev, ZB Levashova, GV Orlova, ...
Nucleic Acids Research 29 (1), 312-316, 2001
|A step-by-step model of TBP/TATA box binding allows predicting human hereditary diseases by single nucleotide polymorphism|
PM Ponomarenko, LK Savinkova, IA Drachkova, MV Lysova, ...
Doklady Biochemistry and Biophysics 419 (1), 88-92, 2008
|SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites|
AE Kel, MP Ponomarenko, EA Likhachev, YL Orlov, IV Ischenko, ...
Bioinformatics 9 (6), 617-627, 1993
|Nucleosomal DNA property database.|
VG Levitsky, MP Ponomarenko, JV Ponomarenko, AS Frolov, ...
Bioinformatics (Oxford, England) 15 (7), 582-592, 1999
|GenViewer: a computing tool for protein-coding regions prediction in nucleotide sequences|
L Milanesi, NA Kolchanov, IB Rogozin, IV Ischenko, AE Kel, YL Orlov, ...
Bioinformatics, Supercomputing and Complex Genome Analysis, 573-587, 1993
|The Mechanism by which TATA‐Box Polymorphisms Associated with Human Hereditary Diseases Influence Interactions with the TATA‐Binding Protein|
I Drachkova, L Savinkova, T Arshinova, M Ponomarenko, S Peltek, ...
Human Mutation 35 (5), 601-608, 2014
|SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data|
JV Ponomarenko, GV Orlova, AS Frolov, MS Gelfand, MP Ponomarenko
Nucleic acids research 30 (1), 195-199, 2002
|ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another|
JV Ponomarenko, DP Furman, AS Frolov, NL Podkolodny, GV Orlova, ...
Nucleic acids research 29 (1), 284-287, 2001
|rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation|
JV Ponomarenko, TI Merkulova, GV Orlova, ON Fokin, EV Gorshkova, ...
Nucleic acids research 31 (1), 118-121, 2003
|Prediction of eukaryotic mRNA translational properties.|
AV Kochetov, MP Ponomarenko, AS Frolov, LL Kisselev, NA Kolchanov
Bioinformatics (Oxford, England) 15 (7), 704-712, 1999
|ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro|
VP Valuev, DA Afonnikov, MP Ponomarenko, L Milanesi, NA Kolchanov
Nucleic acids research 30 (1), 200-202, 2002
|Integrated databases and computer systems for studying eukaryotic gene expression.|
NA Kolchanov, MP Ponomarenko, AS Frolov, EA Ananko, FA Kolpakov, ...
Bioinformatics (Oxford, England) 15 (7), 669-686, 1999
|How to use SNP_TATA_Comparator to find a significant change in gene expression caused by the regulatory SNP of this gene’s promoter via a change in affinity of the TATA-binding …|
M Ponomarenko, D Rasskazov, O Arkova, P Ponomarenko, V Suslov, ...
BioMed research international 2015, 2015