Mikhail Ponomarenko
Mikhail Ponomarenko
Novosibirsk State University; Institute of Cytology and Genetics, Novosibirsk, Russia
Bestätigte E-Mail-Adresse bei bionet.nsc.ru - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Conformational and physicochemical DNA features specific for transcription factor binding sites.
JV Ponomarenko, MP Ponomarenko, AS Frolov, DG Vorobyev, ...
Bioinformatics (Oxford, England) 15 (7), 654-668, 1999
1011999
Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins.
MP Ponomarenko, JV Ponomarenko, AS Frolov, NL Podkolodny, ...
Bioinformatics (Oxford, England) 15 (7), 687-703, 1999
681999
rSNP_Guide: An integrated database‐tools system for studying SNPs and site‐directed mutations in transcription factor binding sites
JV Ponomarenko, GV Orlova, TI Merkulova, EV Gorshkova, ON Fokin, ...
Human mutation 20 (4), 239-248, 2002
672002
An experimental verification of the predicted effects of promoter TATA-box polymorphisms associated with human diseases on interactions between the TATA boxes and TATA-binding …
L Savinkova, I Drachkova, T Arshinova, P Ponomarenko, M Ponomarenko, ...
PloS one 8 (2), e54626, 2013
632013
TATA box polymorphisms in human gene promoters and associated hereditary pathologies
LK Savinkova, MP Ponomarenko, PM Ponomarenko, IA Drachkova, ...
Biochemistry (Moscow) 74 (2), 117-129, 2009
622009
Point mutations within 663–666 bp of intron 6 of the human TDO2 gene, associated with a number of psychiatric disorders, damage the YY-1 transcription factor binding site
GV Vasiliev, VM Merkulov, VF Kobzev, TI Merkulova, MP Ponomarenko, ...
FEBS letters 462 (1-2), 85-88, 1999
511999
Oligonucleotide frequency matrices addressed to recognizing functional DNA sites.
MP Ponomarenko, JV Ponomarenko, AS Frolov, OA Podkolodnaya, ...
Bioinformatics (Oxford, England) 15 (7), 631-643, 1999
511999
rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations
JV Ponomarenko, TI Merkulova, GV Vasiliev, ZB Levashova, GV Orlova, ...
Nucleic Acids Research 29 (1), 312-316, 2001
442001
A step-by-step model of TBP/TATA box binding allows predicting human hereditary diseases by single nucleotide polymorphism
PM Ponomarenko, LK Savinkova, IA Drachkova, MV Lysova, ...
Doklady Biochemistry and Biophysics 419 (1), 88-92, 2008
432008
SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites
AE Kel, MP Ponomarenko, EA Likhachev, YL Orlov, IV Ischenko, ...
Bioinformatics 9 (6), 617-627, 1993
421993
Nucleosomal DNA property database.
VG Levitsky, MP Ponomarenko, JV Ponomarenko, AS Frolov, ...
Bioinformatics (Oxford, England) 15 (7), 582-592, 1999
361999
GenViewer: a computing tool for protein-coding regions prediction in nucleotide sequences
L Milanesi, NA Kolchanov, IB Rogozin, IV Ischenko, AE Kel, YL Orlov, ...
Bioinformatics, Supercomputing and Complex Genome Analysis, 573-587, 1993
361993
The Mechanism by which TATA‐Box Polymorphisms Associated with Human Hereditary Diseases Influence Interactions with the TATA‐Binding Protein
I Drachkova, L Savinkova, T Arshinova, M Ponomarenko, S Peltek, ...
Human Mutation 35 (5), 601-608, 2014
352014
SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data
JV Ponomarenko, GV Orlova, AS Frolov, MS Gelfand, MP Ponomarenko
Nucleic acids research 30 (1), 195-199, 2002
352002
ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another
JV Ponomarenko, DP Furman, AS Frolov, NL Podkolodny, GV Orlova, ...
Nucleic acids research 29 (1), 284-287, 2001
352001
rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation
JV Ponomarenko, TI Merkulova, GV Orlova, ON Fokin, EV Gorshkova, ...
Nucleic acids research 31 (1), 118-121, 2003
332003
Prediction of eukaryotic mRNA translational properties.
AV Kochetov, MP Ponomarenko, AS Frolov, LL Kisselev, NA Kolchanov
Bioinformatics (Oxford, England) 15 (7), 704-712, 1999
311999
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro
VP Valuev, DA Afonnikov, MP Ponomarenko, L Milanesi, NA Kolchanov
Nucleic acids research 30 (1), 200-202, 2002
302002
Integrated databases and computer systems for studying eukaryotic gene expression.
NA Kolchanov, MP Ponomarenko, AS Frolov, EA Ananko, FA Kolpakov, ...
Bioinformatics (Oxford, England) 15 (7), 669-686, 1999
291999
How to use SNP_TATA_Comparator to find a significant change in gene expression caused by the regulatory SNP of this gene’s promoter via a change in affinity of the TATA-binding …
M Ponomarenko, D Rasskazov, O Arkova, P Ponomarenko, V Suslov, ...
BioMed research international 2015, 2015
272015
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