| Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case–control study using centralized ultrasensitive 454 … A Cozzi-Lepri, M Noguera-Julian, F Di Giallonardo, R Schuurman, ... Journal of antimicrobial chemotherapy 70 (3), 930-940, 2015 | 118 | 2015 |
| Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations FD Giallonardo, A Töpfer, M Rey, S Prabhakaran, Y Duport, C Leemann, ... Nucleic acids research 42 (14), e115-e115, 2014 | 107 | 2014 |
| Virological factors that increase the transmissibility of emerging human viruses JL Geoghegan, AM Senior, F Di Giallonardo, EC Holmes Proceedings of the National Academy of Sciences 113 (15), 4170-4175, 2016 | 70 | 2016 |
| Next-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombination F Di Giallonardo, O Zagordi, Y Duport, C Leemann, B Joos, ... PloS one 8 (9), e74249, 2013 | 61 | 2013 |
| RNA-Seq analysis of chikungunya virus infection and identification of granzyme A as a major promoter of arthritic inflammation JAC Wilson, NA Prow, WA Schroder, JJ Ellis, HE Cumming, LJ Gearing, ... PLoS pathogens 13 (2), e1006155, 2017 | 50 | 2017 |
| EH3 (ABHD9): the first member of a new epoxide hydrolase family with high activity for fatty acid epoxides M Decker, M Adamska, A Cronin, F Di Giallonardo, J Burgener, ... Journal of lipid research 53 (10), 2038-2045, 2012 | 49 | 2012 |
| Distinct viral lineages from fish and amphibians reveal the complex evolutionary history of hepadnaviruses JA Dill, AC Camus, JH Leary, F Di Giallonardo, EC Holmes, TFF Ng Journal of virology 90 (17), 7920-7933, 2016 | 48 | 2016 |
| Dinucleotide composition in animal RNA viruses is shaped more by virus family than by host species F Di Giallonardo, TE Schlub, M Shi, EC Holmes Journal of Virology 91 (8), 2017 | 45 | 2017 |
| Tailored enrichment strategy detects low abundant small noncoding RNAs in HIV-1 infected cells CF Althaus, V Vongrad, B Niederöst, B Joos, F Di Giallonardo, P Rieder, ... Retrovirology 9 (1), 27, 2012 | 43 | 2012 |
| Viral biocontrol: grand experiments in disease emergence and evolution F Di Giallonardo, EC Holmes Trends in microbiology 23 (2), 83-90, 2015 | 35 | 2015 |
| Fluid spatial dynamics of West Nile virus in the United States: Rapid spread in a permissive host environment F Di Giallonardo, JL Geoghegan, DE Docherty, RG McLean, MC Zody, ... Journal of virology 90 (2), 862-872, 2016 | 32 | 2016 |
| A framework for inferring fitness landscapes of patient-derived viruses using quasispecies theory D Seifert, F Di Giallonardo, KJ Metzner, HF Günthard, N Beerenwinkel Genetics 199 (1), 191-203, 2015 | 30 | 2015 |
| A comprehensive analysis of primer IDs to study heterogeneous HIV-1 populations D Seifert, F Di Giallonardo, A Töpfer, J Singer, S Schmutz, HF Günthard, ... Journal of molecular biology 428 (1), 238-250, 2016 | 29 | 2016 |
| An international multicenter study on HIV-1 drug resistance testing by 454 ultra-deep pyrosequencing BB Simen, MS Braverman, I Abbate, J Aerssens, Y Bidet, O Bouchez, ... Journal of virological methods 204, 31-37, 2014 | 28 | 2014 |
| Substitution model adequacy and assessing the reliability of estimates of virus evolutionary rates and time scales S Duchêne, F Di Giallonardo, EC Holmes Molecular biology and evolution 33 (1), 255-267, 2016 | 24 | 2016 |
| In-depth analysis of G-to-A hypermutation rate in HIV-1 env DNA induced by endogenous APOBEC3 proteins using massively parallel sequencing SA Knoepfel, F Di Giallonardo, M Däumer, A Thielen, KJ Metzner Journal of virological methods 171 (2), 329-338, 2011 | 22 | 2011 |
| Contribution of APOBEC3G/F activity to the development of low-abundance drug-resistant human immunodeficiency virus type 1 variants M Noguera-Julian, A Cozzi-Lepri, F Di Giallonardo, R Schuurman, ... Clinical microbiology and infection 22 (2), 191-200, 2016 | 21 | 2016 |
| Hidden diversity and evolution of viruses in market fish JL Geoghegan, F Di Giallonardo, K Cousins, M Shi, JE Williamson, ... Virus evolution 4 (2), vey031, 2018 | 17 | 2018 |
| Cross-validation to select Bayesian hierarchical models in phylogenetics S Duchêne, DA Duchêne, F Di Giallonardo, JS Eden, JL Geoghegan, ... BMC evolutionary biology 16 (1), 1-8, 2016 | 16 | 2016 |
| Evolution of human respiratory syncytial virus (RSV) over multiple seasons in New South Wales, Australia F Di Giallonardo, J Kok, M Fernandez, I Carter, JL Geoghegan, DE Dwyer, ... Viruses 10 (9), 476, 2018 | 14 | 2018 |
Edward C HolmesUniversity of SydneyVerified email at sydney.edu.au
