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Brian E. Caffrey
Brian E. Caffrey
Berlin Institute of Health
Verified email at bihealth.de
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Cited by
Year
Succinate is an inflammatory signal that induces IL-1β through HIF-1α
GM Tannahill, AM Curtis, J Adamik, EM Palsson-McDermott, ...
Nature 496 (7444), 238-242, 2013
34032013
Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats
ME Martino, JR Bayjanov, BE Caffrey, M Wels, P Joncour, S Hughes, ...
Environmental microbiology 18 (12), 4974-4989, 2016
2062016
Cell-cycle proteins control production of neutrophil extracellular traps
B Amulic, SL Knackstedt, UA Abed, N Deigendesch, CJ Harbort, ...
Developmental cell 43 (4), 449-462. e5, 2017
1842017
Prediction of human population responses to toxic compounds by a collaborative competition
F Eduati, LM Mangravite, T Wang, H Tang, JC Bare, R Huang, T Norman, ...
Nature biotechnology 33 (9), 933-940, 2015
1192015
The long noncoding RNA CHROME regulates cholesterol homeostasis in primates
EJ Hennessy, C van Solingen, KR Scacalossi, M Ouimet, MS Afonso, ...
Nature metabolism 1 (1), 98-110, 2019
1132019
The role of Ets2 transcription factor in the induction of microRNA-155 (miR-155) by lipopolysaccharide and its targeting by interleukin-10
SR Quinn, NE Mangan, BE Caffrey, MP Gantier, BRG Williams, ...
Journal of Biological Chemistry 289 (7), 4316-4325, 2014
1112014
PFAAT version 2.0: a tool for editing, annotating, and analyzing multiple sequence alignments
DR Caffrey, PH Dana, V Mathur, M Ocano, EJ Hong, YE Wang, ...
BMC bioinformatics 8, 1-7, 2007
692007
Identification of 170 new long noncoding RNAs in Schistosoma mansoni
VF Oliveira, LAG Moares, EA Mota, LK Jannotti-Passos, PMZ Coelho, ...
BioMed research international 2018, 2018
282018
Proteome-wide analysis of functional divergence in bacteria: exploring a host of ecological adaptations
BE Caffrey, TA Williams, X Jiang, C Toft, K Hokamp, MA Fares
PloS one 7 (4), e35659, 2012
202012
Genome-wide Chromatin Profiling of Legionella pneumophila–Infected Human Macrophages Reveals Activation of the Probacterial Host Factor TNFAIP2
I Du Bois, A Marsico, W Bertrams, MR Schweiger, BE Caffrey, ...
The Journal of infectious diseases 214 (3), 454-463, 2016
172016
Nuclear factor κB2 p52 protein has a role in antiviral immunity through IκB kinase ϵ-dependent induction of Sp1 protein and interleukin 15
SL Doyle, KA Shirey, AF McGettrick, EF Kenny, S Carpenter, BE Caffrey, ...
Journal of Biological Chemistry 288 (35), 25066-25075, 2013
162013
A MicroRNA Network Controls Legionella pneumophila Replication in Human Macrophages via LGALS8 and MX1
CE Herkt, BE Caffrey, K Surmann, S Blankenburg, M Gesell Salazar, ...
MBio 11 (2), 10.1128/mbio. 03155-19, 2020
152020
Linker histone H1. 2 and H1. 4 affect the neutrophil lineage determination
G Sollberger, R Streeck, F Apel, BE Caffrey, AI Skoultchi, A Zychlinsky
Elife 9, e52563, 2020
132020
Functional conservation of an ancestral Pellino protein in helminth species
CD Cluxton, BE Caffrey, GK Kinsella, PN Moynagh, MA Fares, PG Fallon
Scientific Reports 5 (1), 11687, 2015
62015
Screening for eukaryotic motifs in Legionella pneumophila reveals Smh1 as bacterial deacetylase of host histones
SM Herbel, L Moyon, M Christ, EM Elsayed, BE Caffrey, S Malmsheimer, ...
Virulence 13 (1), 2042-2058, 2022
12022
Linker Histone H1 subtypes specifically regulate neutrophil differentiation
G Sollberger, R Streeck, BE Caffrey, AI Skoultchi, A Zychlinsky
bioRxiv, 763482, 2019
12019
Computational modeling of miRNA biogenesis
B Caffrey, A Marsico
Mathematical Models in Biology: Bringing Mathematics to Life, 85-98, 2015
12015
Phylogenomic inference of functional divergence
TA Williams, BE Caffrey, X Jiang, C Toft, MA Fares
BMC Bioinformatics 10, 1-2, 2009
12009
A microRNA network controls Legionella pneumophila replication in human macrophages via LGALS8 and MX1. mBio 11: e03155-19
CE Herkt, BE Caffrey, K Surmann, S Blankenburg, M Gesell Salazar, ...
2020
Research Article Identification of 170 New Long Noncoding RNAs in Schistosoma mansoni
VF Oliveira, LAG Moares, EA Mota, LK Jannotti-Passos, PMZ Coelho, ...
2018
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