| Sequence-dependent effects in the cyclization of short DNA L Czapla, D Swigon, WK Olson Journal of chemical theory and computation 2 (3), 685-695, 2006 | 106 | 2006 |
| Molecular simulations of aromatase reveal new insights into the mechanism of ligand binding J Park, L Czapla, RE Amaro Journal of chemical information and modeling 53 (8), 2047-2056, 2013 | 48 | 2013 |
| DNA topology confers sequence specificity to nonspecific architectural proteins J Wei, L Czapla, MA Grosner, D Swigon, WK Olson Proceedings of the National Academy of Sciences 111 (47), 16742-16747, 2014 | 45 | 2014 |
| Understanding apparent DNA flexibility enhancement by HU and HMGB architectural proteins L Czapla, JP Peters, EM Rueter, WK Olson, LJ Maher III Journal of molecular biology 409 (2), 278-289, 2011 | 44 | 2011 |
| Effects of the nucleoid protein HU on the structure, flexibility, and ring-closure properties of DNA deduced from Monte Carlo simulations L Czapla, D Swigon, WK Olson Journal of molecular biology 382 (2), 353-370, 2008 | 41 | 2008 |
| How stiff is DNA? G Zheng, L Czapla, AR Srinivasan, WK Olson Physical Chemistry Chemical Physics 12 (6), 1399-1406, 2010 | 37 | 2010 |
| Interplay of protein and DNA structure revealed in simulations of the lac operon L Czapla, MA Grosner, D Swigon, WK Olson PLoS One 8 (2), e56548, 2013 | 33 | 2013 |
| BROMOC-D: Brownian Dynamics/Monte-Carlo Program Suite to Study Ion and DNA Permeation in Nanopores PM De Biase, CJF Solano, S Markosyan, L Czapla, SY Noskov Journal of Chemical Theory and Computation 8 (7), 2540-2551, 2012 | 31 | 2012 |
| Effect of confinement on DNA, solvent and counterion dynamics in a model biological nanopore S Markosyan, PM De Biase, L Czapla, O Samoylova, G Singh, J Cuervo, ... Nanoscale 6 (15), 9006-9016, 2014 | 20 | 2014 |
| Insights into the sequence-dependent macromolecular properties of DNA from base-pair level modeling WK Olson, AV Colasanti, L Czapla, G Zheng Coarse-graining of condensed phase and biomolecular systems, 205-223, 2008 | 18 | 2008 |
| Structural insights into the role of architectural proteins in DNA looping deduced from computer simulations WK Olson, MA Grosner, L Czapla, D Swigon Biochemical Society Transactions 41 (2), 559-564, 2013 | 11 | 2013 |
| Revisiting DNA sequence-dependent deformability in high-resolution structures: effects of flanking base pairs on dinucleotide morphology and global chain configuration RT Young, L Czapla, ZO Wefers, BM Cohen, WK Olson Life 12 (5), 759, 2022 | 9 | 2022 |
| DelEnsembleElec: Computing ensemble-averaged electrostatics using DelPhi LW Votapka, L Czapla, M Zhenirovskyy, RE Amaro Communications in Computational Physics 13 (1), 256-268, 2013 | 7 | 2013 |
| III Understanding apparent DNA flexibility enhancement by HU and HMGB proteins: experiment and simulation L Czapla, JP Peters, EM Rueter, WK Olson, LJ Maher III J Mol Biol 409 (2), 278-289, 2011 | 5 | 2011 |
| Free energy monte carlo simulations on a distributed network L Czapla, A Siretskiy, J Grime, MO Khan Applied Parallel and Scientific Computing: 10th International Conference …, 2012 | 1 | 2012 |
| Effect of Tetrameric Base-Pair Context on the Sequence-Dependent Configurations of DNA Minicircles RT Young, B Cohen, L Czapla, PJ Perez, WK Olson Biophysical Journal 116 (3), 358a-359a, 2019 | | 2019 |
| Molecular simulations of cytochrome P450 3A4 L Czapla, RE Amaro, M Kontoyianni ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 243, 2012 | | 2012 |
| Developing open-source tools to streamline computational research LW Votapka, L Czapla, M Zhenirovskyy, O Demir, RE Amaro ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 243, 2012 | | 2012 |
| The Role of Architectural Proteins in Lac-Mediated DNA Looping L Czapla, D Swigon, WK Olson Biophysical Journal 100 (3), 71a, 2011 | | 2011 |
| The statistical mechanics of free and protein-bound DNA by Monte Carlo simulation L Czapla Rutgers The State University of New Jersey, School of Graduate Studies, 2009 | | 2009 |
David SwigonAssociate Professor of Mathematics, University of PittsburghVerified email at pitt.edu
