Kiran Raosaheb Patil
Kiran Raosaheb Patil
Structural & Comp. Biol. Unit, EMBL; MRC Toxicology Unit, University of Cambridge
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Titel
Zitiert von
Zitiert von
Jahr
Uncovering transcriptional regulation of metabolism by using metabolic network topology
KR Patil, J Nielsen
Proceedings of the national academy of sciences 102 (8), 2685-2689, 2005
5192005
Extensive impact of non-antibiotic drugs on human gut bacteria
L Maier, M Pruteanu, M Kuhn, G Zeller, A Telzerow, EE Anderson, ...
Nature 555 (7698), 623-628, 2018
4642018
Evolutionary programming as a platform for in silico metabolic engineering
KR Patil, I Rocha, J Förster, J Nielsen
BMC bioinformatics 6 (1), 308, 2005
4532005
OptFlux: an open-source software platform for in silico metabolic engineering
I Rocha, P Maia, P Evangelista, P Vilaça, S Soares, JP Pinto, J Nielsen, ...
BMC systems biology 4 (1), 45, 2010
3652010
Metabolic dependencies drive species co-occurrence in diverse microbial communities
A Zelezniak, S Andrejev, O Ponomarova, DR Mende, P Bork, KR Patil
Proceedings of the National Academy of Sciences 112 (20), 6449-6454, 2015
2822015
The metabolic response of heterotrophic Arabidopsis cells to oxidative stress
CJ Baxter, H Redestig, N Schauer, D Repsilber, KR Patil, J Nielsen, ...
Plant physiology 143 (1), 312-325, 2007
2502007
Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering
MA Asadollahi, J Maury, KR Patil, M Schalk, A Clark, J Nielsen
Metabolic engineering 11 (6), 328-334, 2009
2162009
Improved vanillin production in baker's yeast through in silico design
AR Brochado, C Matos, BL Møller, J Hansen, UH Mortensen, KR Patil
Microbial cell factories 9 (1), 84, 2010
2122010
Towards standards for human fecal sample processing in metagenomic studies
PI Costea, G Zeller, S Sunagawa, E Pelletier, A Alberti, F Levenez, ...
Nature biotechnology 35 (11), 1069, 2017
2062017
Use of genome-scale microbial models for metabolic engineering
KR Patil, M Åkesson, J Nielsen
Current opinion in biotechnology 15 (1), 64-69, 2004
1742004
Integration of metabolome data with metabolic networks reveals reporter reactions
T Cakir, KR Patil, ZI Önsan, KÖ Ülgen, B Kirdar, J Nielsen
Molecular systems biology 2 (1), 2006
1512006
Industrial systems biology of Saccharomyces cerevisiae enables novel succinic acid cell factory
JM Otero, D Cimini, KR Patil, SG Poulsen, L Olsson, J Nielsen
PloS one 8 (1), 2013
1352013
Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks
AP Oliveira, KR Patil, J Nielsen
BMC systems biology 2 (1), 17, 2008
1352008
Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium
A Montagud, E Navarro, PF de Córdoba, JF Urchueguía, KR Patil
BMC systems biology 4 (1), 156, 2010
1282010
BioMet Toolbox: genome-wide analysis of metabolism
M Cvijovic, R Olivares-Hernï¿ ½ndez, R Agren, N Dahr, W Vongsangnak, ...
Nucleic acids research 38 (suppl_2), W144-W149, 2010
1252010
Metabolic interactions in microbial communities: untangling the Gordian knot
O Ponomarova, KR Patil
Current opinion in microbiology 27, 37-44, 2015
1142015
Natural computation meta-heuristics for the in silico optimization of microbial strains
M Rocha, P Maia, R Mendes, JP Pinto, EC Ferreira, J Nielsen, KR Patil, ...
BMC bioinformatics 9 (1), 499, 2008
1072008
Metabolic network topology reveals transcriptional regulatory signatures of type 2 diabetes
A Zelezniak, TH Pers, S Soares, ME Patti, KR Patil
PLoS computational biology 6 (4), 2010
902010
Versatile enzyme expression and characterization system for Aspergillus nidulans, with the Penicillium brevicompactum polyketide synthase gene from the mycophenolic acid gene …
BG Hansen, B Salomonsen, MT Nielsen, JB Nielsen, NB Hansen, ...
Appl. Environ. Microbiol. 77 (9), 3044-3051, 2011
802011
Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803
A Montagud, A Zelezniak, E Navarro, PF de Córdoba, JF Urchueguía, ...
Biotechnology journal 6 (3), 330-342, 2011
712011
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