Bradley Bernstein
Bradley Bernstein
Professor of Pathology, Harvard University
Verified email at broadinstitute.org
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
10504*2012
Model-based analysis of ChIP-Seq (MACS)
Y Zhang, T Liu, CA Meyer, J Eeckhoute, DS Johnson, BE Bernstein, ...
Genome biology 9 (9), 1-9, 2008
77222008
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
BE Bernstein, TS Mikkelsen, X Xie, M Kamal, DJ Huebert, J Cuff, B Fry, ...
Cell 125 (2), 315-326, 2006
49322006
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
E Lieberman-Aiden, NL Van Berkum, L Williams, M Imakaev, T Ragoczy, ...
science 326 (5950), 289-293, 2009
48432009
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
TS Mikkelsen, M Ku, DB Jaffe, B Issac, E Lieberman, G Giannoukos, ...
Nature 448 (7153), 553-560, 2007
40402007
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
M Guttman, I Amit, M Garber, C French, MF Lin, D Feldser, M Huarte, ...
Nature 458 (7235), 223-227, 2009
36032009
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
32712015
In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state
M Wernig, A Meissner, R Foreman, T Brambrink, M Ku, K Hochedlinger, ...
nature 448 (7151), 318-324, 2007
31622007
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
AM Khalil, M Guttman, M Huarte, M Garber, A Raj, DR Morales, K Thomas, ...
Proceedings of the National Academy of Sciences 106 (28), 11667-11672, 2009
25842009
Mapping and analysis of chromatin state dynamics in nine human cell types
J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh, LD Ward, CB Epstein, ...
Nature 473 (7345), 43-49, 2011
25212011
Genome-scale DNA methylation maps of pluripotent and differentiated cells
A Meissner, TS Mikkelsen, H Gu, M Wernig, J Hanna, A Sivachenko, ...
Nature 454 (7205), 766-770, 2008
24252008
The mammalian epigenome
BE Bernstein, A Meissner, ES Lander
Cell 128 (4), 669-681, 2007
22592007
Active genes are tri-methylated at K4 of histone H3
H Santos-Rosa, R Schneider, AJ Bannister, J Sherriff, BE Bernstein, ...
Nature 419 (6905), 407-411, 2002
21172002
Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma
AP Patel, I Tirosh, JJ Trombetta, AK Shalek, SM Gillespie, H Wakimoto, ...
Science 344 (6190), 1396-1401, 2014
20052014
Genomic maps and comparative analysis of histone modifications in human and mouse
BE Bernstein, M Kamal, K Lindblad-Toh, S Bekiranov, DK Bailey, ...
Cell 120 (2), 169-181, 2005
15612005
Dissecting direct reprogramming through integrative genomic analysis
TS Mikkelsen, J Hanna, X Zhang, M Ku, M Wernig, P Schorderet, ...
Nature 454 (7200), 49-55, 2008
15602008
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
13052012
Initial genome sequencing and analysis of multiple myeloma
MA Chapman, MS Lawrence, JJ Keats, K Cibulskis, C Sougnez, ...
Nature 471 (7339), 467-472, 2011
12872011
The NIH roadmap epigenomics mapping consortium
BE Bernstein, JA Stamatoyannopoulos, JF Costello, B Ren, ...
Nature biotechnology 28 (10), 1045-1048, 2010
12812010
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biol 9 (4), e1001046, 2011
11602011
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