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Simon J. Puglisi
Simon J. Puglisi
Associate Professor, Department of Computer Science, University of Helsinki
Bestätigte E-Mail-Adresse bei cs.helsinki.fi - Startseite
Titel
Zitiert von
Zitiert von
Jahr
A taxonomy of suffix array construction algorithms
SJ Puglisi, WF Smyth, AH Turpin
acm Computing Surveys (CSUR) 39 (2), 4-es, 2007
3952007
SHREC: a short-read error correction method
J Schröder, H Schröder, SJ Puglisi, R Sinha, B Schmidt
Bioinformatics 25 (17), 2157-2163, 2009
2062009
Relative Lempel-Ziv compression of genomes for large-scale storage and retrieval
S Kuruppu, SJ Puglisi, J Zobel
International Symposium on String Processing and Information Retrieval, 201-206, 2010
1702010
Permuted longest-common-prefix array
J Kärkkäinen, G Manzini, SJ Puglisi
Annual Symposium on Combinatorial Pattern Matching, 181-192, 2009
1352009
Order-preserving matching
J Kim, P Eades, R Fleischer, SH Hong, CS Iliopoulos, K Park, SJ Puglisi, ...
Theoretical Computer Science 525, 68-79, 2014
1302014
New algorithms on wavelet trees and applications to information retrieval
T Gagie, G Navarro, SJ Puglisi
Theoretical Computer Science 426, 25-41, 2012
1182012
A faster grammar-based self-index
T Gagie, P Gawrychowski, J Kärkkäinen, Y Nekrich, SJ Puglisi
International Conference on Language and Automata Theory and Applications …, 2012
1062012
Optimized relative Lempel-Ziv compression of genomes
S Kuruppu, SJ Puglisi, J Zobel
Proceedings of the Thirty-Fourth Australasian Computer Science Conference …, 2011
1042011
Succinct colored de Bruijn graphs
MD Muggli, A Bowe, NR Noyes, PS Morley, KE Belk, R Raymond, T Gagie, ...
Bioinformatics 33 (20), 3181-3187, 2017
962017
Range quantile queries: Another virtue of wavelet trees
T Gagie, SJ Puglisi, A Turpin
International Symposium on String Processing and Information Retrieval, 1-6, 2009
932009
LZ77-based self-indexing with faster pattern matching
T Gagie, P Gawrychowski, J Kärkkäinen, Y Nekrich, SJ Puglisi
Latin American Symposium on Theoretical Informatics, 731-742, 2014
832014
Top-k Ranked Document Search in General Text Databases
JS Culpepper, G Navarro, SJ Puglisi, A Turpin
European Symposium on Algorithms, 194-205, 2010
792010
Colored range queries and document retrieval
T Gagie, J Kärkkäinen, G Navarro, SJ Puglisi
Theoretical Computer Science 483, 36-50, 2013
762013
Lempel–Ziv Factorization Using Less Time & Space
G Chen, SJ Puglisi, WF Smyth
Mathematics in Computer Science 1 (4), 605-623, 2008
762008
Linear time Lempel-Ziv factorization: Simple, fast, small
J Kärkkäinen, D Kempa, SJ Puglisi
Annual Symposium on Combinatorial Pattern Matching, 189-200, 2013
752013
How many runs can a string contain?
SJ Puglisi, J Simpson, WF Smyth
Theoretical Computer Science 401 (1-3), 165-171, 2008
722008
A fast hybrid short read fragment assembly algorithm
B Schmidt, R Sinha, B Beresford-Smith, SJ Puglisi
Bioinformatics 25 (17), 2279-2280, 2009
702009
Variable-order de Bruijn graphs
C Boucher, A Bowe, T Gagie, SJ Puglisi, K Sadakane
2015 data compression conference, 383-392, 2015
662015
Space-time tradeoffs for longest-common-prefix array computation
SJ Puglisi, A Turpin
International Symposium on Algorithms and Computation, 124-135, 2008
592008
Relative Lempel-Ziv factorization for efficient storage and retrieval of web collections
C Hoobin, SJ Puglisi, J Zobel
arXiv preprint arXiv:1106.2587, 2011
562011
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