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Jesse van dam
Jesse van dam
Verified email at wur.nl
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Cited by
Year
GeneFriends: an online co-expression analysis tool to identify novel gene targets for aging and complex diseases
S van Dam, R Cordeiro, T Craig, J van Dam, SH Wood, JP de Magalhăes
BMC genomics 13 (1), 535, 2012
722012
NG-Tax 2.0: A semantic framework for high-throughput amplicon analysis
W Poncheewin, GDA Hermes, JCJ Van Dam, JJ Koehorst, H Smidt, ...
Frontiers in genetics 10, 1366, 2020
502020
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
JJ Koehorst, JCJ Van Dam, RGA Van Heck, E Saccenti, ...
Scientific reports 6, 38699, 2016
482016
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles
JJ Koehorst, JCJ van Dam, E Saccenti, VAP Martins dos Santos, ...
Bioinformatics 1, 3, 2017
452017
Regulation of Three Virulence Strategies of Mycobacterium tuberculosis: A Success Story
NA Zondervan, JCJ van Dam, PJ Schaap, VAP Martins dos Santos, ...
International journal of molecular sciences 19 (2), 347, 2018
332018
Consistency, inconsistency, and ambiguity of metabolite names in biochemical databases used for genome-scale metabolic modelling
N Pham, RGA van Heck, JCJ van Dam, PJ Schaap, E Saccenti, ...
Metabolites 9 (2), 28, 2019
192019
RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource
JCJ van Dam, JJ Koehorst, PJ Schaap, VAPM dos Santos, M Suarez-Diez
Journal of biomedical semantics 6 (1), 39, 2015
182015
Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis
JCJ van Dam, PJ Schaap, VAPM dos Santos, M Suárez-Diez
BMC systems biology 8 (1), 111, 2014
172014
The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation
JCJ van Dam, JJ Koehorst, JO Vik, VAPM Dos Santos, PJ Schaap, ...
Scientific data 6 (1), 1-9, 2019
92019
Interoperable genome annotation with GBOL, an extendable infrastructure for functional data mining
JCJ van Dam, JJJ Koehorst, JO Vik, PJ Schaap, M Suarez-Diez
bioRxiv, 184747, 2017
82017
Towards Computational Evaluation of Evidence for Scientific Assertions with Nanopublications and Cardinal Assertions
A Gibson, JCJ Van Dam, EA Schultes, M Roos, B Mons
Proceedings of the 5th International Workshop on Semantic Web Applications …, 2012
72012
Semantic systems biology of prokaryotes: heterogeneous data integration to understand bacterial metabolism
JCJ van Dam
12019
SyNDI: synchronous network data integration framework
E Lindfors, JCJ van Dam, CMC Lam, NA Zondervan, VAPM Dos Santos, ...
BMC bioinformatics 19 (1), 1-15, 2018
12018
SALARECON connects the Atlantic salmon genome to growth and feed efficiency
M Zakhartsev, F Rotnes, M Gulla, O Řyĺs, JCJ van Dam, M Suarez-Diez, ...
bioRxiv, 2021
2021
The Empusa code generator: bridging the gap between the intended and the actual content of RDF resources
JCJ van Dam, JJ Koehorst, PJ Schaap, M Suarez-Diez
arXiv preprint arXiv:1812.04386, 2018
2018
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