Adam Rubin
Adam Rubin
Post-doctoral Fellow, Broad Institute
Verified email at
Cited by
Cited by
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
MR Corces, AE Trevino, EG Hamilton, PG Greenside, ...
Nature methods 14 (10), 959-962, 2017
HiChIP: efficient and sensitive analysis of protein-directed genome architecture
MR Mumbach, AJ Rubin, RA Flynn, C Dai, PA Khavari, WJ Greenleaf, ...
Nature methods 13 (11), 919-922, 2016
Measuring the activity of BioBrick promoters using an in vivo reference standard
JR Kelly, AJ Rubin, JH Davis, CM Ajo-Franklin, J Cumbers, MJ Czar, ...
Journal of biological engineering 3 (1), 1-13, 2009
Design, construction and characterization of a set of insulated bacterial promoters
JH Davis, AJ Rubin, RT Sauer
Nucleic acids research 39 (3), 1131-1141, 2011
Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements
MR Mumbach, AT Satpathy, EA Boyle, C Dai, BG Gowen, SW Cho, ...
Nature genetics 49 (11), 1602-1612, 2017
Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation
AJ Rubin, BC Barajas, M Furlan-Magaril, V Lopez-Pajares, MR Mumbach, ...
Nature genetics 49 (10), 1522-1528, 2017
Multimodal analysis of composition and spatial architecture in human squamous cell carcinoma
AL Ji, AJ Rubin, K Thrane, S Jiang, DL Reynolds, RM Meyers, MG Guo, ...
Cell 182 (2), 497-514. e22, 2020
A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63
X Bao, AJ Rubin, K Qu, J Zhang, PG Giresi, HY Chang, PA Khavari
Genome biology 16 (1), 1-17, 2015
Coupled single-cell CRISPR screening and epigenomic profiling reveals causal gene regulatory networks
AJ Rubin, KR Parker, AT Satpathy, Y Qi, B Wu, AJ Ong, MR Mumbach, ...
Cell 176 (1-2), 361-376. e17, 2019
Transcript-indexed ATAC-seq for precision immune profiling
AT Satpathy, N Saligrama, JD Buenrostro, Y Wei, B Wu, AJ Rubin, ...
Nature medicine 24 (5), 580-590, 2018
7SK-BAF axis controls pervasive transcription at enhancers
RA Flynn, BT Do, AJ Rubin, E Calo, B Lee, H Kuchelmeister, M Rale, ...
Nature structural & molecular biology 23 (3), 231-238, 2016
Retinoic acid and BMP4 cooperate with p63 to alter chromatin dynamics during surface epithelial commitment
JM Pattison, SP Melo, SN Piekos, JL Torkelson, E Bashkirova, ...
Nature genetics 50 (12), 1658-1665, 2018
HiChIRP reveals RNA-associated chromosome conformation
MR Mumbach, JM Granja, RA Flynn, CM Roake, AT Satpathy, AJ Rubin, ...
Nature methods 16 (6), 489-492, 2019
CSNK1a1 regulates PRMT1 to maintain the progenitor state in self-renewing somatic tissue
X Bao, Z Siprashvili, BJ Zarnegar, RM Shenoy, EJ Rios, N Nady, K Qu, ...
Developmental cell 43 (2), 227-239. e5, 2017
Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma
KY Sarin, Y Lin, R Daneshjou, A Ziyatdinov, G Thorleifsson, A Rubin, ...
Nature communications 11 (1), 1-8, 2020
Divergent effects of canonical and non‐canonical TGF‐β signalling on mixed contractile‐synthetic smooth muscle cell phenotype in human Marfan syndrome aortic root aneurysms
AJ Pedroza, T Koyano, J Trojan, A Rubin, I Palmon, K Jaatinen, G Burdon, ...
Journal of cellular and molecular medicine 24 (3), 2369-2383, 2020
Omni-ATAC-seq: improved ATAC-seq protocol
MR Corces, MR Corces, AE Trevino, EG Hamilton, PG Greenside, ...
Protocol Exchange 1, 96, 2017
The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation
DS Kim, VI Risca, DL Reynolds, J Chappell, AJ Rubin, N Jung, ...
Nature Genetics, 1-13, 2021
Enhancer connectome in primary human cells reveals target genes of disease-associated DNA elements
MR Mumbach, AT Satpathy, EA Boyle, C Dai, BG Gowen, SW Cho, ...
bioRxiv, 178269, 2017
Dissecting intercellular communication in adult human skin with single-cell and spatial transcriptomics
A Ji, K Thrane, M Guo, A Rubin, D Kim, T Hollmig, S Aasi, J Lundeberg, ...
Journal of Investigative Dermatology 141 (5), S17-S17, 2021
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