Strange nonchaotic attractors A Prasad, SS Negi, R Ramaswamy International Journal of bifurcation and Chaos 11 (02), 291-309, 2001 | 194 | 2001 |
InterProSurf: a web server for predicting interacting sites on protein surfaces SS Negi, CH Schein, N Oezguen, TD Power, W Braun Bioinformatics 23 (24), 3397-3399, 2007 | 186 | 2007 |
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
Automated detection of conformational epitopes using phage display peptide sequences SS Negi, W Braun Bioinformatics and biology insights 3, BBI. S2745, 2009 | 112 | 2009 |
Conformational flexibility of mammalian cytochrome P450 2B4 in binding imidazole inhibitors with different ring chemistry and side chains: solution thermodynamics and molecular … BK Muralidhara, S Negi, CC Chin, W Braun, JR Halpert Journal of Biological Chemistry 281 (12), 8051-8061, 2006 | 87 | 2006 |
Comprehensive 3D-modeling of allergenic proteins and amino acid composition of potential conformational IgE epitopes N Oezguen, B Zhou, SS Negi, O Ivanciuc, CH Schein, G Labesse, ... Molecular immunology 45 (14), 3740-3747, 2008 | 81 | 2008 |
The importance of the 2S albumins for allergenicity and cross-reactivity of peanuts, tree nuts, and sesame seeds SC Dreskin, SJ Koppelman, S Andorf, KC Nadeau, A Kalra, W Braun, ... Journal of Allergy and Clinical Immunology 147 (4), 1154-1163, 2021 | 69 | 2021 |
Conformational IgE epitopes of peanut allergens Ara h 2 and Ara h 6 X Chen, SS Negi, S Liao, V Gao, W Braun, SC Dreskin Clinical & Experimental Allergy 46 (8), 1120-1128, 2016 | 60 | 2016 |
Structural analysis of linear and conformational epitopes of allergens O Ivanciuc, CH Schein, T Garcia, N Oezguen, SS Negi, W Braun Regulatory toxicology and pharmacology 54 (3), S11-S19, 2009 | 58 | 2009 |
Statistical analysis of physical-chemical properties and prediction of protein-protein interfaces SS Negi, W Braun Journal of molecular modeling 13, 1157-1167, 2007 | 57 | 2007 |
Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity SS Negi, W Braun Bioinformatics 33 (7), 1014-1020, 2017 | 53 | 2017 |
Western equine encephalitis virus: evolutionary analysis of a declining alphavirus based on complete genome sequences NA Bergren, AJ Auguste, NL Forrester, SS Negi, WA Braun, SC Weaver Journal of virology 88 (16), 9260-9267, 2014 | 53 | 2014 |
Membrane fusion triggering: three modules with different structure and function in the upper half of the measles virus attachment protein stalk CK Navaratnarajah, S Negi, W Braun, R Cattaneo Journal of Biological Chemistry 287 (46), 38543-38551, 2012 | 53 | 2012 |
Base of the measles virus fusion trimer head receives the signal that triggers membrane fusion S Apte-Sengupta, S Negi, VHJ Leonard, N Oezguen, CK Navaratnarajah, ... Journal of Biological Chemistry 287 (39), 33026-33035, 2012 | 49 | 2012 |
Rational engineering of human cytochrome P450 2B6 for enhanced expression and stability: importance of a Leu264→ Phe substitution S Kumar, Y Zhao, L Sun, SS Negi, JR Halpert, BK Muralidhara Molecular pharmacology 72 (5), 1191-1199, 2007 | 41 | 2007 |
Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023 | 37 | 2023 |
Regional and temporal coordinated mutation patterns in SARS-CoV-2 spike protein revealed by a clustering and network analysis SS Negi, CH Schein, W Braun Scientific reports 12 (1), 1128, 2022 | 37 | 2022 |
Bifurcations and transitions in the quasiperiodically driven logistic map SS Negi, A Prasad, R Ramaswamy Physica D: Nonlinear Phenomena 145 (1-2), 1-12, 2000 | 35 | 2000 |
Thermodynamics of phosphopeptide tethering to BRCT: the structural minima for inhibitor design GL Lokesh, BK Muralidhara, SS Negi, A Natarajan Journal of the American Chemical Society 129 (35), 10658-10659, 2007 | 32 | 2007 |
Functional classification of protein toxins as a basis for bioinformatic screening SS Negi, CH Schein, GS Ladics, H Mirsky, P Chang, JB Rascle, J Kough, ... Scientific reports 7 (1), 13940, 2017 | 30 | 2017 |