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Ian Michael Kenney
Ian Michael Kenney
Postdoctoral Research Scholar, Arizona State University
Verified email at asu.edu
Title
Cited by
Cited by
Year
MDAnalysis: a Python package for the rapid analysis of molecular dynamics simulations
RJ Gowers, M Linke, J Barnoud, TJE Reddy, MN Melo, SL Seyler, ...
Los Alamos National lab.(LANL), Los Alamos, NM (United States), 2019
10812019
Proceedings of the 15th python in science conference
RJ Gowers, M Linke, J Barnoud, TJE Reddy, MN Melo, SL Seyler, ...
Austin, TX, 2016
562016
Prediction of cyclohexane-water distribution coefficients for the SAMPL5 data set using molecular dynamics simulations with the OPLS-AA force field
IM Kenney, O Beckstein, BI Iorga
Journal of computer-aided molecular design 30, 1045-1058, 2016
272016
SAMPL6: calculation of macroscopic pKa values from ab initio quantum mechanical free energies
E Selwa, IM Kenney, O Beckstein, BI Iorga
Journal of computer-aided molecular design 32 (10), 1203-1216, 2018
222018
MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations, 2016
RJ Gowers, M Linke, J Barnoud, T Reddy, M Melo, S Seyler, J Domański, ...
Los Alamos National Lab.(LANL), Los Alamos, NM (United States), 2020
202020
Crystal structure of the Na+/H+ antiporter NhaA at active pH reveals the mechanistic basis for pH sensing
I Winkelmann, P Uzdavinys, IM Kenney, J Brock, PF Meier, LM Wagner, ...
Nature communications 13 (1), 6383, 2022
172022
MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations. Austin, Texas; 2016
R Gowers, M Linke, J Barnoud, T Reddy, M Melo, S Seyler, J Domański, ...
There is no corresponding record for this reference, 98-105, 0
11
Energy coupling and stoichiometry of Zn2+/H+ antiport by the prokaryotic cation diffusion facilitator YiiP
A Hussein, S Fan, M Lopez-Redondo, I Kenney, X Zhang, O Beckstein, ...
Elife 12, RP87167, 2023
42023
Thermodynamically consistent determination of free energies and rates in kinetic cycle models
IM Kenney, O Beckstein
Biophysical Reports 3 (3), 2023
32023
Inferring the transport stoichiometry of the proton/zinc transporter YiiP from microscale thermophoresis and simulations
S Fan, AK Hussein, IM Kenney, DL Stokes, O Beckstein
Biophysical Journal 122 (3), 530a, 2023
2023
Thermodynamically consistent stochastic models for active transmembrane transport processes
O Beckstein, IM Kenney, N Awtrey, S Fan
Biophysical journal 122 (3), 33a, 2023
2023
Energy coupling and stoichiometry of Zn2+/H+ antiport by the prokaryotic cation diffusion facilitator YiiP
H Adel, F Shujie, M Lopez-Redondo, I Kenney, X Zhang, B Oliver, ...
eLife 12, 2023
2023
Construction of Potential Graphs from Relative Free Energies
IM Kenney, S Pressé, O Beckstein
Biophysical Journal 120 (3), 269a, 2021
2021
Highlights from recent SAMPL participations
H Nedev, S Fan, IM Kenney, O Beckstein, B Iorga
16th German Conference on Cheminformatics and SAMPL Satellite Workshop …, 2020
2020
Molecular Mechanism of Alternating-access Transport in a Sodium/Proton Antiporter
O Beckstein, IM Kenney, C Zhang, F Naughton, R Sexton, S Fan, ...
Biophysical Journal 118 (3), 19a, 2020
2020
Formalism for coupled equilibria: statistical mechanics and applications
I Kenney, B Iorga, S Pressé, O Beckstein
Bulletin of the American Physical Society 63, 2018
2018
pKa prediction on the SAMPL6 dataset: Lessons learned
E Selwa, IM Kenney, O Beckstein, B Iorga
D3R/SAMPL Workshop 2018, 2018
2018
Towards an automated pipeline for solvation free energy calculations
I Kenney, O Beckstein, B Iorga
Bulletin of the American Physical Society 60, 2015
2015
Technical Report: SPIDAL Summer REU 2015: Biomolecular benchmark systems
I Kenney, O Beckstein
2015
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Articles 1–19