| MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis GV Uritskiy, J DiRuggiero, J Taylor Microbiome 6 (1), 158, 2018 | 1213 | 2018 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 191 | 2022 |
| Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ... Nature biotechnology 40 (5), 711-719, 2022 | 116 | 2022 |
| Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert G Uritskiy, S Getsin, A Munn, B Gomez-Silva, A Davila, B Glass, J Taylor, ... The ISME Journal 13 (11), 2737-2749, 2019 | 66 | 2019 |
| Applying genome-resolved metagenomics to deconvolute the halophilic microbiome G Uritskiy, J DiRuggiero Genes 10 (3), 220, 2019 | 32 | 2019 |
| Cellular life from the three domains and viruses are transcriptionally active in a hypersaline desert community G Uritskiy, MJ Tisza, DR Gelsinger, A Munn, J Taylor, J DiRuggiero Environmental Microbiology 23 (7), 3401-3417, 2021 | 26 | 2021 |
| Glycosylation and oligomeric state of envelope protein might influence HIV-1 virion capture by α4β7 integrin S Chand, EL Messina, W AlSalmi, N Ananthaswamy, G Gao, G Uritskiy, ... Virology 508, 199-212, 2017 | 22 | 2017 |
| Generation and characterization of a bivalent protein boost for future clinical trials: HIV-1 subtypes CR01_AE and B gp120 antigens with a potent adjuvant Y Wen, HV Trinh, CE Linton, C Tani, N Norais, DA Martinez-Guzman, ... PLoS One 13 (4), e0194266, 2018 | 15 | 2018 |
| Generation of lineage-resolved complete metagenome-assembled genomes by precision phasing DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ... bioRxiv, 2021.05. 04.442591, 2021 | 13 | 2021 |
| Regulatory noncoding small RNAs are diverse and abundant in an extremophilic microbial community DR Gelsinger, G Uritskiy, R Reddy, A Munn, K Farney, J DiRuggiero Msystems 5 (1), 10.1128/msystems. 00584-19, 2020 | 13 | 2020 |
| Environmental factors driving spatial heterogeneity in desert halophile microbial communities G Uritskiy, A Munn, M Dailey, DR Gelsinger, S Getsin, A Davila, ... Frontiers in microbiology, 2571, 2020 | 12 | 2020 |
| Humoral response to the HIV-1 envelope V2 region in a Thai early acute infection cohort HV Trinh, N Gohain, PT Pham, C Hamlin, H Song, E Sanders-Buell, ... Cells 8 (4), 365, 2019 | 10 | 2019 |
| Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up … JS Meisel, DJ Nasko, B Brubach, V Cepeda-Espinoza, J Chopyk, ... Microbiome 6 (1), 1-10, 2018 | 10 | 2018 |
| Accurate viral genome reconstruction and host assignment with proximity-ligation sequencing G Uritskiy, M Press, C Sun, GD Huerta, AA Zayed, A Wiser, J Grove, ... BioRxiv, 2021.06. 14.448389, 2021 | 8 | 2021 |
| Current state of and future opportunities for prediction in microbiome research: report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019 E Sakowski, G Uritskiy, R Cooper, M Gomes, MR McLaren, JS Meisel, ... Msystems 4 (5), e00392-19, 2019 | 8 | 2019 |
| A genetic shift in an escaped transmitted/founder virus guides combinatorial vaccine design against HIV-1 S Jain, G Uritskiy, M Mahalingam, H Batra, S Chand, H Trinh, C Beck, ... bioRxiv, 2021.06. 16.448593, 2021 | 3 | 2021 |
| Microbial community adaptations and dynamics in extremophile microbiomes of the Atacama Desert G Uritskiy The Johns Hopkins University, 2020 | 1 | 2020 |
| Resilience and adaptation mechanisms of an extremophile microbial com-munity following a catastrophic climate event G Uritskiy, S Getsin, A Munn, B Gómez-Silva, A Davila33, B Glass, ... bioRxiv, 2019 | 1 | 2019 |
| A remarkable genetic shift in a transmitted/founder virus broadens antibody responses against HIV-1 S Jain, G Uritskiy, M Mahalingam, H Batra, S Chand, HV Trinh, C Beck, ... Elife 13, RP92379, 2024 | | 2024 |
| Stress responses of microbial communities from hypersaline environments G Uritskiy, D Gelsinger, A Munn, S Getsin, J DiRuggiero Biophysical Journal 121 (3), 296a, 2022 | | 2022 |
Jocelyne DiRuggieroJohns Hopkins UniversityVerified email at jhu.edu
