| Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma TA Addona, SE Abbatiello, B Schilling, SJ Skates, DR Mani, DM Bunk, ... Nature biotechnology 27 (7), 633-641, 2009 | 1139 | 2009 |
| Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach SA Carr, SE Abbatiello, BL Ackermann, C Borchers, B Domon, ... Molecular & Cellular Proteomics 13 (3), 907-917, 2014 | 555 | 2014 |
| Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry B MacLean, DM Tomazela, SE Abbatiello, S Zhang, JR Whiteaker, ... Analytical chemistry 82 (24), 10116-10124, 2010 | 264 | 2010 |
| Comprehensive single-shot proteomics with FAIMS on a hybrid orbitrap mass spectrometer AS Hebert, S Prasad, MW Belford, DJ Bailey, GC McAlister, SE Abbatiello, ... Analytical Chemistry 90 (15), 9529-9537, 2018 | 239 | 2018 |
| Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry SE Abbatiello, DR Mani, H Keshishian, SA Carr Clinical chemistry 56 (2), 291-305, 2010 | 204 | 2010 |
| Large-scale interlaboratory study to develop, analytically validate and apply highly multiplexed, quantitative peptide assays to measure cancer-relevant proteins in plasma SE Abbatiello, B Schilling, DR Mani, LJ Zimmerman, SC Hall, B MacLean, ... Molecular & Cellular Proteomics 14 (9), 2357-2374, 2015 | 194 | 2015 |
| Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins JJ Kennedy, SE Abbatiello, K Kim, P Yan, JR Whiteaker, C Lin, JS Kim, ... Nature methods 11 (2), 149-155, 2014 | 191 | 2014 |
| CPTAC Assay Portal: a repository of targeted proteomic assays JR Whiteaker, GN Halusa, AN Hoofnagle, V Sharma, B MacLean, P Yan, ... Nature methods 11 (7), 703-704, 2014 | 166 | 2014 |
| Characterization and optimization of multiplexed quantitative analyses using high-field asymmetric-waveform ion mobility mass spectrometry DK Schweppe, S Prasad, MW Belford, J Navarrete-Perea, DJ Bailey, ... Analytical chemistry 91 (6), 4010-4016, 2019 | 165 | 2019 |
| Evaluation of large scale quantitative proteomic assay development using peptide affinity-based mass spectrometry JR Whiteaker, L Zhao, SE Abbatiello, M Burgess, E Kuhn, CW Lin, ... Molecular & cellular proteomics 10 (4), 2011 | 155 | 2011 |
| Statistical characterization of multiple-reaction monitoring mass spectrometry (MRM-MS) assays for quantitative proteomics DR Mani, SE Abbatiello, SA Carr BMC bioinformatics 13, 1-18, 2012 | 134 | 2012 |
| Design, implementation and multisite evaluation of a system suitability protocol for the quantitative assessment of instrument performance in liquid chromatography-multiple … SE Abbatiello, DR Mani, B Schilling, B MacLean, LJ Zimmerman, X Feng, ... Molecular & Cellular Proteomics 12 (9), 2623-2639, 2013 | 125 | 2013 |
| Reduced-representation phosphosignatures measured by quantitative targeted MS capture cellular states and enable large-scale comparison of drug-induced phenotypes JG Abelin, J Patel, X Lu, CM Feeney, L Fagbami, AL Creech, R Hu, D Lam, ... Molecular & Cellular Proteomics 15 (5), 1622-1641, 2016 | 99 | 2016 |
| The Blood Proteoform Atlas: A reference map of proteoforms in human hematopoietic cells RD Melani, VR Gerbasi, LC Anderson, JW Sikora, TK Toby, JE Hutton, ... Science 375 (6579), 411-418, 2022 | 71 | 2022 |
| Improved sensitivity of ultralow flow LC–MS-based proteomic profiling of limited samples using monolithic capillary columns and FAIMS technology M Greguš, JC Kostas, S Ray, SE Abbatiello, AR Ivanov Analytical chemistry 92 (21), 14702-14712, 2020 | 54 | 2020 |
| Comprehensive LESA mass spectrometry imaging of intact proteins by integration of cylindrical FAIMS RL Griffiths, JW Hughes, SE Abbatiello, MW Belford, IB Styles, HJ Cooper Analytical chemistry 92 (4), 2885-2890, 2020 | 48 | 2020 |
| New guidelines for publication of manuscripts describing development and application of targeted mass spectrometry measurements of peptides and proteins S Abbatiello, BL Ackermann, C Borchers, RA Bradshaw, SA Carr, ... Molecular & Cellular Proteomics 16 (3), 327-328, 2017 | 46 | 2017 |
| Deeper protein identification using field asymmetric ion mobility spectrometry in top-down proteomics VR Gerbasi, RD Melani, SE Abbatiello, MW Belford, R Huguet, JP McGee, ... Analytical chemistry 93 (16), 6323-6328, 2021 | 41 | 2021 |
| A framework for installable external tools in Skyline D Broudy, T Killeen, M Choi, N Shulman, DR Mani, SE Abbatiello, D Mani, ... Bioinformatics 30 (17), 2521-2523, 2014 | 37 | 2014 |
| Efficient expression, purification, and characterization of C-terminally tagged, recombinant human asparagine synthetase M Ciustea, JA Gutierrez, SE Abbatiello, JR Eyler, NGJ Richards Archives of biochemistry and biophysics 440 (1), 18-27, 2005 | 27 | 2005 |
