Umer Zeeshan Ijaz
Umer Zeeshan Ijaz
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Cited by
Cited by
Binning metagenomic contigs by coverage and composition
J Alneberg, BS Bjarnason, I De Bruijn, M Schirmer, J Quick, UZ Ijaz, ...
Nature methods 11 (11), 1144-1146, 2014
Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
M Schirmer, UZ Ijaz, R D'Amore, N Hall, WT Sloan, C Quince
Nucleic acids research 43 (6), e37-e37, 2015
A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling
R D’Amore, UZ Ijaz, M Schirmer, JG Kenny, R Gregory, AC Darby, ...
BMC genomics 17 (1), 1-20, 2016
Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data
M Schirmer, R D’Amore, UZ Ijaz, N Hall, C Quince
BMC bioinformatics 17 (1), 1-15, 2016
Bacterial diversity along a 2600 km river continuum
D Savio, L Sinclair, UZ Ijaz, J Parajka, GH Reischer, P Stadler, ...
Environmental microbiology 17 (12), 4994-5007, 2015
Extensive modulation of the fecal metagenome in children with Crohn's disease during exclusive enteral nutrition
C Quince, UZ Ijaz, N Loman, AM Eren, D Saulnier, J Russell, SJ Haig, ...
The American journal of gastroenterology 110 (12), 1718, 2015
Metagenomic Evidence for the Presence of Comammox Nitrospira-Like Bacteria in a Drinking Water System
AJ Pinto, DN Marcus, UZ Ijaz, QM Bautista-de Lose Santos, GJ Dick, ...
Msphere 1 (1), e00054-15, 2016
Treatment of active Crohn’s disease with an ordinary food-based diet that replicates exclusive enteral nutrition
V Svolos, R Hansen, B Nichols, C Quince, UZ Ijaz, RT Papadopoulou, ...
Gastroenterology 156 (5), 1354-1367. e6, 2019
Three-dimensional ultrasound imaging
RW Prager, UZ Ijaz, AH Gee, GM Treece
Proceedings of the Institution of Mechanical Engineers, Part H: Journal of …, 2010
Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic …
BN Parsons, UZ Ijaz, R D’Amore, MD Burkitt, R Eccles, L Lenzi, ...
PLoS pathogens 13 (11), e1006653, 2017
The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool
J De Vrieze, AJ Pinto, WT Sloan, UZ Ijaz
Microbiome 6 (1), 1-13, 2018
Microbial community redundancy in anaerobic digestion drives process recovery after salinity exposure
J De Vrieze, MER Christiaens, D Walraedt, A Devooght, UZ Ijaz, N Boon
Water research 111, 109-117, 2017
Host–microbiome interactions in human type 2 diabetes following prebiotic fibre (galacto-oligosaccharide) intake
C Pedersen, E Gallagher, F Horton, RJ Ellis, UZ Ijaz, H Wu, E Jaiyeola, ...
British Journal of Nutrition 116 (11), 1869-1877, 2016
Emerging investigators series: microbial communities in full-scale drinking water distribution systems–a meta-analysis
QM Bautista-de los Santos, JL Schroeder, MC Sevillano-Rivera, ...
Environmental Science: Water Research & Technology 2 (4), 631-644, 2016
Long solids retention times and attached growth phase favor prevalence of comammox bacteria in nitrogen removal systems
I Cotto, Z Dai, L Huo, CL Anderson, KJ Vilardi, U Ijaz, W Khunjar, C Wilson, ...
Water research 169, 115268, 2020
CONCOCT: clustering contigs on coverage and composition
J Alneberg, BS Bjarnason, I de Bruijn, M Schirmer, J Quick, UZ Ijaz, ...
arXiv preprint arXiv:1312.4038, 2013
NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform
ST Calus, UZ Ijaz, AJ Pinto
GigaScience 7 (12), giy140, 2018
The effect of DNA extraction methodology on gut microbiota research applications
K Gerasimidis, M Bertz, C Quince, K Brunner, A Bruce, E Combet, S Calus, ...
BMC research notes 9 (1), 1-10, 2016
Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines
B Torondel, JHJ Ensink, O Gundogdu, UZ Ijaz, J Parkhill, F Abdelahi, ...
Microbial biotechnology 9 (2), 209-223, 2016
Metagenomic evidence for the presence of comammox
AJ Pinto, DN Marcus, UZ Ijaz, QM Bautista-de Lose Santos, GJ Dick, ...
Nitrospira, 2016
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