Nadezhda T. Doncheva
Nadezhda T. Doncheva
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Bestätigte E-Mail-Adresse bei cpr.ku.dk
Titel
Zitiert von
Zitiert von
Jahr
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ...
Nucleic acids research 47 (D1), D607-D613, 2019
42962019
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ...
Nucleic acids research, gkw937, 2016
42482016
Topological analysis and interactive visualization of biological networks and protein structures
NT Doncheva, Y Assenov, FS Domingues, M Albrecht
Nature protocols 7 (4), 670, 2012
3972012
Cytoscape stringApp: Network analysis and visualization of proteomics data
NT Doncheva, JH Morris, J Gorodkin, LJ Jensen
Journal of proteome research 18 (2), 623-632, 2018
3292018
Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis
JZ Liu, JR Hov, T Folseraas, E Ellinghaus, SM Rushbrook, NT Doncheva, ...
Nature genetics 45 (6), 670-675, 2013
3252013
Analyzing and visualizing residue networks of protein structures
NT Doncheva, K Klein, FS Domingues, M Albrecht
Trends in biochemical sciences 36 (4), 179-182, 2011
2062011
Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies
D Ellinghaus, H Zhang, S Zeissig, S Lipinski, A Till, T Jiang, B Stade, ...
Gastroenterology 145 (2), 339-347, 2013
1412013
Recent approaches to the prioritization of candidate disease genes
NT Doncheva, T Kacprowski, M Albrecht
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 4 (5), 429-442, 2012
592012
Viruses. STRING: A virus-host protein-protein interaction database
H Cook, N Doncheva, D Szklarczyk, C von Mering, L Jensen
Viruses 10 (10), 519, 2018
482018
NetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other molecules
T Kacprowski, NT Doncheva, M Albrecht
Bioinformatics 29 (11), 1471-1473, 2013
422013
Profiling of Parkin-binding partners using tandem affinity purification
A Zanon, A Rakovic, H Blankenburg, NT Doncheva, C Schwienbacher, ...
PLoS ONE 8 (11), e78648, 2013
392013
Abundant Genetic Overlap between Blood Lipids and Immune-Mediated Diseases Indicates Shared Molecular Genetic Mechanisms
OA Andreassen, RS Desikan, Y Wang, WK Thompson, AJ Schork, ...
PLoS ONE 10 (4), 2015
372015
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
D Szklarczyk, AL Gable, KC Nastou, D Lyon, R Kirsch, S Pyysalo, ...
Nucleic Acids Research 49 (D1), D605-D612, 2021
362021
Visualize omics data on networks with Omics Visualizer, a Cytoscape App
M Legeay, NT Doncheva, JH Morris, LJ Jensen
F1000Research 9, 2020
162020
SetsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges
JH Morris, S Lotia, A Wu, NT Doncheva, M Albrecht, AR Pico, TE Ferrin
F1000Research 3, 2014
102014
setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges
JH Morris, S Lotia, A Wu, NT Doncheva, M Albrecht, AR Pico, TE Ferrin
F1000Research 3, 2014
102014
SetsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges
JH Morris, S Lotia, A Wu, NT Doncheva, M Albrecht, AR Pico, TE Ferrin
F1000Research 3, 2014
102014
Consistent prediction of mutation effect on drug binding in HIV-1 protease using alchemical calculations
T Bastys, V Gapsys, NT Doncheva, R Kaiser, BL de Groot, OV Kalinina
Journal of chemical theory and computation 14 (7), 3397-3408, 2018
92018
Integrative visual analysis of protein sequence mutations
NT Doncheva, K Klein, JH Morris, M Wybrow, FS Domingues, M Albrecht
BMC Proceedings 8 (Suppl 2), S2, 2014
92014
Proceedings of the EuBIC-MS 2020 Developers’ Meeting
C Ashwood, W Bittremieux, EW Deutsch, NT Doncheva, V Dorfer, ...
EuPA Open Proteomics 24, 1-6, 2020
22020
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