Jonathan Friedman
Jonathan Friedman
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Cited by
Cited by
Structure, function and diversity of the healthy human microbiome
C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ...
nature 486 (7402), 207, 2012
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
nature 486 (7402), 215, 2012
Inferring correlation networks from genomic survey data
J Friedman, EJ Alm
PLoS Comput Biol 8 (9), e1002687, 2012
Ecology drives a global network of gene exchange connecting the human microbiome
CS Smillie, MB Smith, J Friedman, OX Cordero, LA David, EJ Alm
Nature 480 (7376), 241-244, 2011
Host lifestyle affects human microbiota on daily timescales
LA David, AC Materna, J Friedman, MI Campos-Baptista, MC Blackburn, ...
Genome biology 15 (7), R89, 2014
Population genomics of early events in the ecological differentiation of bacteria
BJ Shapiro, J Friedman, OX Cordero, SP Preheim, SC Timberlake, ...
science 336 (6077), 48-51, 2012
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
S Weiss, W Van Treuren, C Lozupone, K Faust, J Friedman, Y Deng, ...
The ISME journal 10 (7), 1669-1681, 2016
Community structure follows simple assembly rules in microbial microcosms
J Friedman, LM Higgins, J Gore
Nature ecology & evolution 1 (5), 1-7, 2017
Universality of human microbial dynamics
A Bashan, TE Gibson, J Friedman, VJ Carey, ST Weiss, EL Hohmann, ...
Nature 534 (7606), 259-262, 2016
Strain tracking reveals the determinants of bacterial engraftment in the human gut following fecal microbiota transplantation
CS Smillie, J Sauk, D Gevers, J Friedman, J Sung, I Youngster, ...
Cell host & microbe 23 (2), 229-240. e5, 2018
Looking for Darwin's footprints in the microbial world
BJ Shapiro, LA David, J Friedman, EJ Alm
Trends in microbiology 17 (5), 196-204, 2009
Mapping the ecological networks of microbial communities
Y Xiao, MT Angulo, J Friedman, MK Waldor, ST Weiss, YY Liu
Nature communications 8 (1), 1-12, 2017
Cyanobacterial diversity and activity in modern conical microbialites
T Bosak, B Liang, TD Wu, SP Templer, A Evans, H Vali, JL Guerquin‐Kern, ...
Geobiology 10 (5), 384-401, 2012
Computational methods for high-throughput comparative analyses of natural microbial communities
SP Preheim, AR Perrotta, J Friedman, C Smilie, I Brito, MB Smith, E Alm
Methods in enzymology 531, 353-370, 2013
Sympatric speciation: when is it possible in bacteria?
J Friedman, EJ Alm, BJ Shapiro
PLoS One 8 (1), e53539, 2013
Ecological systems biology: The dynamics of interacting populations
J Friedman, J Gore
Current Opinion in Systems Biology 1, 114-121, 2017
Shape and evolution of the fundamental niche in marine Vibrio
AC Materna, J Friedman, C Bauer, C David, S Chen, IB Huang, A Gillens, ...
The ISME journal 6 (12), 2168-2177, 2012
Genome holography: deciphering function-form motifs from gene expression data
A Madi, Y Friedman, D Roth, T Regev, S Bransburg-Zabary, EB Jacob
PLoS One 3 (7), e2708, 2008
Massively parallel screening of synthetic microbial communities
J Kehe, A Kulesa, A Ortiz, CM Ackerman, SG Thakku, D Sellers, S Kuehn, ...
Proceedings of the National Academy of Sciences 116 (26), 12804-12809, 2019
Surveys, simulation and single-cell assays relate function and phylogeny in a lake ecosystem
SP Preheim, SW Olesen, SJ Spencer, A Materna, C Varadharajan, ...
Nature microbiology 1 (9), 1-9, 2016
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