Katharina Hoff
Katharina Hoff
Privatdozentin at University of Greifswald
Bestätigte E-Mail-Adresse bei - Startseite
Zitiert von
Zitiert von
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
KK Dasmahapatra, JR Walters, AD Briscoe, JW Davey, A Whibley, ...
Nature 487, 94-98, 2012
BRAKER1: unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS
KJ Hoff, S Lange, A Lomsadze, M Borodovsky, M Stanke
Bioinformatics 32 (5), 767-769, 2016
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database
T Brůna, KJ Hoff, A Lomsadze, M Stanke, M Borodovsky
NAR genomics and bioinformatics 3 (1), lqaa108, 2021
Finding the missing honey bee genes: lessons learned from a genome upgrade
CG Elsik, KC Worley, AK Bennett, M Beye, F Camara, CP Childers, ...
BMC genomics 15 (1), 1-29, 2014
Whole-Genome Annotation with BRAKER
KJ Hoff, A Lomsadze, M Borodovsky, M Stanke
Methods in Molecular Biology 1962, 65-95, 2019
The genomes of two key bumblebee species with primitive eusocial organization
BM Sadd, SM Barribeau, G Bloch, DC De Graaf, P Dearden, CG Elsik, ...
Genome biology 16 (1), 1-32, 2015
WebAUGUSTUS—a web service for training AUGUSTUS and predicting genes in eukaryotes
KJ Hoff, M Stanke
Nucleic acids research 41 (W1), W123-W128, 2013
Predicting genes in single genomes with AUGUSTUS
KJ Hoff, M Stanke
Current protocols in bioinformatics 65 (1), e57, 2019
Orphelia: predicting genes in metagenomic sequencing reads
KJ Hoff, T Lingner, P Meinicke, M Tech
Nucleic acids research 37 (suppl_2), W101-W105, 2009
The effect of sequencing errors on metagenomic gene prediction
KJ Hoff
BMC genomics 10 (1), 1-9, 2009
Gene prediction in metagenomic fragments: a large scale machine learning approach
KJ Hoff, M Tech, T Lingner, R Daniel, B Morgenstern, P Meinicke
BMC bioinformatics 9, 1-14, 2008
Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria
H Philippe, AJ Poustka, M Chiodin, KJ Hoff, C Dessimoz, B Tomiczek, ...
Current Biology, 2019
Verticillium transcription activator of adhesion Vta2 suppresses microsclerotia formation and is required for systemic infection of plant roots
VT Tran, SA Braus‐Stromeyer, H Kusch, M Reusche, A Kaever, A Kühn, ...
New Phytologist 202 (2), 565-581, 2014
The nervous system of Xenacoelomorpha: a genomic perspective
E Perea-Atienza, B Gavilán, M Chiodin, JF Abril, KJ Hoff, AJ Poustka, ...
Journal of Experimental Biology 218 (4), 618-628, 2015
TSEBRA: Transcript Selector for BRAKER
L Gabriel, KJ Hoff, T Bruna, M Borodovsky, M Stanke
BMC Bioinformatics 22, 556, 2021
Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation
MM Sheffer, A Hoppe, H Krehenwinkel, G Uhl, AW Kuss, L Jensen, ...
Gigascience 10 (1), giaa148, 2021
Current methods for automated annotation of protein-coding genes
KJ Hoff, M Stanke
Current Opinion in insect science 7, 8-14, 2015
Standards recommendations for the Earth BioGenome Project
MKN Lawniczak, R Durbin, P Flicek, K Lindblad-Toh, X Wei, JM Archibald, ...
Proceedings of the National Academy of Sciences of the United States of …, 2022
An Initial Comparative Genomic Autopsy of Wasting Disease in Sea Stars
D Ruiz-Ramos, L Schiebelhut, KJ Hoff, J Wares, M Dawson
Molecular Ecology,, 2020
BRAKER2: incorporating protein homology information into gene prediction with GeneMark-EP and AUGUSTUS
KJ Hoff, A Lomsadze, M Stanke, M Borodovsky
Plant and Animal Genomes XXVI, 2018
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