Katharina Hoff
Katharina Hoff
Bestätigte E-Mail-Adresse bei uni-greifswald.de - Startseite
Zitiert von
Zitiert von
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
KK Dasmahapatra, JR Walters, AD Briscoe, JW Davey, A Whibley, ...
Nature 487, 94-98, 2012
BRAKER1: unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS
KJ Hoff, S Lange, A Lomsadze, M Borodovsky, M Stanke
Bioinformatics 32 (5), 767-769, 2016
Finding the missing honey bee genes: lessons learned from a genome upgrade
CG Elsik, KC Worley, AK Bennett, M Beye, F Camara, CP Childers, ...
BMC genomics 15 (1), 1-29, 2014
The genomes of two key bumblebee species with primitive eusocial organization
BM Sadd, SM Barribeau, G Bloch, DC De Graaf, P Dearden, CG Elsik, ...
Genome biology 16 (1), 1-32, 2015
WebAUGUSTUS—a web service for training AUGUSTUS and predicting genes in eukaryotes
KJ Hoff, M Stanke
Nucleic acids research 41 (W1), W123-W128, 2013
Orphelia: predicting genes in metagenomic sequencing reads
KJ Hoff, T Lingner, P Meinicke, M Tech
Nucleic acids research 37 (suppl_2), W101-W105, 2009
Whole-Genome Annotation with BRAKER
KJ Hoff, A Lomsadze, M Borodovsky, M Stanke
Methods in Molecular Biology 1962, 65-95, 2019
Gene prediction in metagenomic fragments: a large scale machine learning approach
KJ Hoff, M Tech, T Lingner, R Daniel, B Morgenstern, P Meinicke
BMC bioinformatics 9 (1), 1-14, 2008
The effect of sequencing errors on metagenomic gene prediction
KJ Hoff
BMC genomics 10 (1), 1-9, 2009
Verticillium transcription activator of adhesion Vta2 suppresses microsclerotia formation and is required for systemic infection of plant roots
VT Tran, SA Braus‐Stromeyer, H Kusch, M Reusche, A Kaever, A Kühn, ...
New Phytologist 202 (2), 565-581, 2014
Predicting genes in single genomes with AUGUSTUS
KJ Hoff, M Stanke
Current protocols in bioinformatics 65 (1), e57, 2019
Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria
H Philippe, AJ Poustka, M Chiodin, KJ Hoff, C Dessimoz, B Tomiczek, ...
Current Biology, 2019
The nervous system of Xenacoelomorpha: a genomic perspective
E Perea-Atienza, B Gavilán, M Chiodin, JF Abril, KJ Hoff, AJ Poustka, ...
Journal of Experimental Biology 218 (4), 618-628, 2015
Current methods for automated annotation of protein-coding genes
KJ Hoff, M Stanke
Current Opinion in insect science 7, 8-14, 2015
BRAKER2: Automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database
T Brůna, KJ Hoff, A Lomsadze, M Stanke, M Borodovsky
NAR Genomics and Bioinformatics 3 (1), lqaa108, 2021
BRAKER2: incorporating protein homology information into gene prediction with GeneMark-EP and AUGUSTUS
KJ Hoff, A Lomsadze, M Stanke, M Borodovsky
Plant and Animal Genomes XXVI, 2018
An Initial Comparative Genomic Autopsy of Wasting Disease in Sea Stars
D Ruiz-Ramos, L Schiebelhut, KJ Hoff, J Wares, M Dawson
Molecular Ecology, https://doi.org/10.1111/mec.15386, 2020
Non-invasive and label-free 3D-visualization shows in vivo oligomerization of the staphylococcal alkaline shock protein 23 (Asp23)
I Petersen, R Schlüter, KJ Hoff, V Liebscher, G Bange, K Riedel, ...
Scientific reports 10 (1), 1-7, 2020
MakeHub: fully automated generation of UCSC genome browser assembly hubs
KJ Hoff
Genomics, proteomics & bioinformatics 17 (5), 546-549, 2019
VARUS: Sampling Complementary RNA Reads from the Sequence Read Archive
M Stanke, W Bruhn, F Becker, KJ Hoff
BMC Bioinformatics 20 (558), https://doi.org/10.1101/608737, 2019
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