BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins AJ van Heel, A de Jong, C Song, JH Viel, J Kok, OP Kuipers Nucleic acids research 46 (W1), W278-W281, 2018 | 662 | 2018 |
BAGEL3: automated identification of genes encoding bacteriocins and (non-) bactericidal posttranslationally modified peptides AJ Van Heel, A de Jong, M Montalban-Lopez, J Kok, OP Kuipers Nucleic acids research 41 (W1), W448-W453, 2013 | 536 | 2013 |
Mapping the Pathways to StaphylococcalPathogenesis by Comparative Secretomics M Sibbald, AK Ziebandt, S Engelmann, M Hecker, A De Jong, ... Microbiology and Molecular Biology Reviews 70 (3), 755-788, 2006 | 385 | 2006 |
BAGEL: a web-based bacteriocin genome mining tool A de Jong, SAFT van Hijum, JJE Bijlsma, J Kok, OP Kuipers Nucleic acids research 34 (suppl_2), W273-W279, 2006 | 298 | 2006 |
Genome Engineering Reveals Large Dispensable Regions in Bacillus subtilis H Westers, R Dorenbos, JM Van Dijl, J Kabel, T Flanagan, KM Devine, ... Molecular Biology and Evolution 20 (12), 2076-2090, 2003 | 254 | 2003 |
Signal peptidase I of Bacillus subtilis: patterns of conserved amino acids in prokaryotic and eukaryotic type I signal peptidases. JM van Dijl, A De Jong, J Vehmaanperä, G Venema, S Bron The EMBO journal 11 (8), 2819-2828, 1992 | 215 | 1992 |
BAGEL2: mining for bacteriocins in genomic data A De Jong, AJ van Heel, J Kok, OP Kuipers Nucleic acids research 38 (suppl_2), W647-W651, 2010 | 199 | 2010 |
PePPER: a webserver for prediction of prokaryote promoter elements and regulons A de Jong, H Pietersma, M Cordes, OP Kuipers, J Kok BMC genomics 13, 1-10, 2012 | 185 | 2012 |
CodY of Streptococcus pneumoniae: Link between Nutritional Gene Regulation and Colonization WT Hendriksen, HJ Bootsma, S Estevao, T Hoogenboezem, A de Jong, ... Journal of bacteriology 190 (2), 590-601, 2008 | 169 | 2008 |
Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach LW Hamoen, WK Smits, A Jong, S Holsappel, OP Kuipers Nucleic acids research 30 (24), 5517-5528, 2002 | 165 | 2002 |
Evaluation of Bottlenecks in the Late Stages of Protein Secretion in Bacillus subtilis A Bolhuis, H Tjalsma, HE Smith, A De Jong, R Meima, G Venema, S Bron, ... Applied and Environmental Microbiology 65 (7), 2934-2941, 1999 | 163 | 1999 |
A novel scheme to assess factors involved in the reproducibility of DNA-microarray data SAFT Van Hijum, A De Jong, RJS Baerends, HA Karsens, NE Kramer, ... Genome Biology 6, 1-35, 2005 | 141 | 2005 |
Identification of the Potential Active Site of the Signal Peptidase SipS of Bacillus subtilis: STRUCTURAL AND FUNCTIONAL SIMILARITIES WITH LexA-LIKE PROTEASES (∗) JM van Dijl, A de Jong, G Venema, S Bron Journal of Biological Chemistry 270 (8), 3611-3618, 1995 | 133 | 1995 |
LmrCD is a major multidrug resistance transporter in Lactococcus lactis J Lubelski, A De Jong, R Van Merkerk, H Agustiandari, OP Kuipers, J Kok, ... Molecular microbiology 61 (3), 771-781, 2006 | 130 | 2006 |
Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data RJS Baerends, WK Smits, A de Jong, LW Hamoen, J Kok, OP Kuipers Genome Biology 5, 1-6, 2004 | 121 | 2004 |
Mining prokaryotes for antimicrobial compounds: from diversity to function V Tracanna, A de Jong, MH Medema, OP Kuipers FEMS Microbiology Reviews 41 (3), 417-429, 2017 | 115 | 2017 |
Distinct roles of phenol-soluble modulins in spreading of Staphylococcus aureus on wet surfaces E Tsompanidou, EL Denham, D Becher, A de Jong, G Buist, ... Applied and environmental microbiology 79 (3), 886-895, 2013 | 102 | 2013 |
The endogenous Bacillus subtilis (natto) plasmids pTA1015 and pTA1040 contain signal peptidase‐encoding genes: identification of a new structural module on … WJJ Meijer, A De Jong, G Bea, A Wisman, H Tjalsma, G Venema, S Bron, ... Molecular microbiology 17 (4), 621-631, 1995 | 100 | 1995 |
High- and low-affinity cre boxes for CcpA binding in Bacillus subtilis revealed by genome-wide analysis BC Marciniak, M Pabijaniak, A de Jong, R Dűhring, G Seidel, W Hillen, ... BMC genomics 13, 1-15, 2012 | 92 | 2012 |
Extracellular Proteome and Citrullinome of the Oral Pathogen Porphyromonas gingivalis T Stobernack, C Glasner, S Junker, G Gabarrini, M de Smit, A de Jong, ... Journal of proteome research 15 (12), 4532-4543, 2016 | 88 | 2016 |