An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17, 1-19, 2016
412 2016 RNA target profiles direct the discovery of virulence functions for the cold-shock proteins CspC and CspE C Michaux, E Holmqvist, E Vasicek, M Sharan, L Barquist, ...
Proceedings of the National Academy of Sciences 114 (26), 6824-6829, 2017
117 2017 Functional high-throughput screening identifies the miR-15 microRNA family as cellular restriction factors for Salmonella infection C Maudet, M Mano, U Sunkavalli, M Sharan, M Giacca, KU Förstner, ...
Nature communications 5 (1), 4718, 2014
101 2014 Chlamydia preserves the mitochondrial network necessary for replication via microRNA-dependent inhibition of fissionSR Chowdhury, A Reimer, M Sharan, V Kozjak-Pavlovic, A Eulalio, ...
Journal of Cell Biology 216 (4), 1071-1089, 2017
94 2017 Cell differentiation defines acute and chronic infection cell types in Staphylococcus aureus JC García-Betancur, A Goñi-Moreno, T Horger, M Schott, M Sharan, ...
Elife 6, e28023, 2017
69 2017 Ten simple rules for organizing an unconference A Budd, H Dinkel, M Corpas, JC Fuller, L Rubinat, DP Devos, ...
PLoS computational biology 11 (1), e1003905, 2015
66 2015 APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins M Sharan, KU Förstner, A Eulalio, J Vogel
Nucleic acids research 45 (11), e96-e96, 2017
27 2017 Functional screenings reveal different requirements for host microRNAs in Salmonella and Shigella infection C Aguilar, AR Cruz, I Rodrigues Lopes, C Maudet, U Sunkavalli, RJ Silva, ...
Nature microbiology 5 (1), 192-205, 2020
26 2020 A systematic analysis of the RNA-targeting potential of secreted bacterial effector proteins C Tawk, M Sharan, A Eulalio, J Vogel
Scientific reports 7 (1), 9328, 2017
26 2017 Centering inclusivity in the design of online conferences—An OHBM–Open Science perspective E Levitis, CDG Van Praag, R Gau, S Heunis, E DuPre, G Kiar, ...
GigaScience 10 (8), giab051, 2021
25 2021 Analysis of host microRNA function uncovers a role for miR-29b-2-5p in Shigella capture by filopodia U Sunkavalli, C Aguilar, RJ Silva, M Sharan, AR Cruz, C Tawk, C Maudet, ...
PLoS pathogens 13 (4), e1006327, 2017
23 2017 An intrinsically disordered proteins community for ELIXIR NE Davey, MM Babu, M Blackledge, A Bridge, S Capella-Gutierrez, ...
F1000Research 8, 2019
15 2019 Measurement of double-parton scattering in inclusive production of four jets with low transverse momentum in proton-proton collisions at = 13 TeV CMS collaboration
arXiv preprint arXiv:2109.13822, 2021
14 2021 Ten simple rules for establishing a mentorship programme AM Treasure, SM Hall, I Lesko, D Moore, M Sharan, M van Zaanen, ...
PLoS computational biology 18 (5), e1010015, 2022
12 2022 morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring I Wagner, M Volkmer, M Sharan, JM Villaveces, F Oswald, ...
BMC bioinformatics 15, 1-11, 2014
12 2014 Enhancing the inclusivity and accessibility of your online calls Y Yehudi, KS Whitney, M Sharan
OSF Preprints, 2020
4 2020 Azimuthal separation in nearly back-to-back jet topologies in inclusive 2- and 3-jet events in pp collisions at 13 TeV H Bakhshiansohi, O Bondu, S Brochet, G Bruno, P David, C Delaere, ...
European Physical Journal C. Particles and Fields, 773, 2019
4 * 2019 The de. NBI/ELIXIR-DE training platform-Bioinformatics training in Germany and across Europe within ELIXIR D Wibberg, B Batut, P Belmann, J Blom, FO Glöckner, B Grüning, ...
F1000Research 8, 2019
4 2019 BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference NL Harris, PJA Cock, CJ Fields, K Hokamp, J Maia, M Munoz-Torres, ...
F1000Research 10, 2021
2 2021 Conserved SQ and QS motifs in bacterial effectors suggest pathogen interplay with the ATM kinase family during infection D Sampietro, H Sámano-Sánchez, NE Davey, M Sharan, B Mészáros, ...
bioRxiv, 364117, 2018
2 2018