Aindrila Mukhopadhyay
TitleCited byYear
Engineering microbial biofuel tolerance and export using efflux pumps
MJ Dunlop, ZY Dossani, HL Szmidt, HC Chu, TS Lee, JD Keasling, ...
Molecular systems biology 7 (1), 2011
4102011
Biofuel alternatives to ethanol: pumping the microbial well
JL Fortman, S Chhabra, A Mukhopadhyay, H Chou, TS Lee, E Steen, ...
Trends in biotechnology 26 (7), 375-381, 2008
4092008
Identification and microbial production of a terpene-based advanced biofuel
PP Peralta-Yahya, M Ouellet, R Chan, A Mukhopadhyay, JD Keasling, ...
Nature communications 2, 483, 2011
3932011
Engineering dynamic pathway regulation using stress-response promoters
RH Dahl, F Zhang, J Alonso-Gutierrez, E Baidoo, TS Batth, ...
Nature biotechnology 31 (11), 1039, 2013
2982013
Modular engineering of L-tyrosine production in Escherichia coli
D Juminaga, EEK Baidoo, AM Redding-Johanson, TS Batth, H Burd, ...
Appl. Environ. Microbiol. 78 (1), 89-98, 2012
2152012
Functional genomic study of exogenous n-butanol stress in Escherichia coli
BJ Rutherford, RH Dahl, RE Price, HL Szmidt, PI Benke, A Mukhopadhyay, ...
Appl. Environ. Microbiol. 76 (6), 1935-1945, 2010
2062010
Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach
A Mukhopadhyay, Z He, EJ Alm, AP Arkin, EE Baidoo, SC Borglin, ...
Journal of bacteriology 188 (11), 4068-4078, 2006
1602006
4.0- resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement
Y Cong, ML Baker, J Jakana, D Woolford, EJ Miller, S Reissmann, ...
Proceedings of the National Academy of Sciences 107 (11), 4967-4972, 2010
1522010
Targeted proteomics for metabolic pathway optimization: application to terpene production
AM Redding-Johanson, TS Batth, R Chan, R Krupa, HL Szmidt, ...
Metabolic engineering 13 (2), 194-203, 2011
1462011
Enhancing fatty acid production by the expression of the regulatory transcription factor FadR
F Zhang, M Ouellet, TS Batth, PD Adams, CJ Petzold, A Mukhopadhyay, ...
Metabolic engineering 14 (6), 653-660, 2012
1412012
Importance of systems biology in engineering microbes for biofuel production
A Mukhopadhyay, AM Redding, BJ Rutherford, JD Keasling
Current opinion in biotechnology 19 (3), 228-234, 2008
1402008
How sulphate-reducing microorganisms cope with stress: lessons from systems biology
J Zhou, Q He, CL Hemme, A Mukhopadhyay, K Hillesland, A Zhou, Z He, ...
Nature Reviews Microbiology 9 (6), 452-466, 2011
1302011
Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis
HT Parsons, K Christiansen, B Knierim, A Carroll, J Ito, TS Batth, ...
Plant physiology 159 (1), 12-26, 2012
1242012
Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust
L Rajeev, UN Da Rocha, N Klitgord, EG Luning, J Fortney, SD Axen, ...
The ISME journal 7 (11), 2178-2191, 2013
1192013
Analysis of the Arabidopsis Cytosolic Proteome Highlights Subcellular Partitioning of Central Plant Metabolism
J Ito, TS Batth, CJ Petzold, AM Redding-Johanson, A Mukhopadhyay, ...
Journal of proteome research 10 (4), 1571-1582, 2011
1162011
A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels
JI Park, EJ Steen, H Burd, SS Evans, AM Redding-Johnson, T Batth, ...
PloS one 7 (5), 2012
1152012
Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough
A Mukhopadhyay, AM Redding, MP Joachimiak, AP Arkin, SE Borglin, ...
Journal of bacteriology 189 (16), 5996-6010, 2007
1122007
A model for improving microbial biofuel production using a synthetic feedback loop
MJ Dunlop, JD Keasling, A Mukhopadhyay
Systems and synthetic biology 4 (2), 95-104, 2010
1112010
Biosynthesis and incorporation of side‐chain‐truncated lignin monomers to reduce lignin polymerization and enhance saccharification
A Eudes, A George, P Mukerjee, JS Kim, B Pollet, PI Benke, F Yang, ...
Plant biotechnology journal 10 (5), 609-620, 2012
1102012
Impact of ionic liquid pretreated plant biomass on Saccharomyces cerevisiae growth and biofuel production
M Ouellet, S Datta, DC Dibble, PR Tamrakar, PI Benke, C Li, S Singh, ...
Green Chemistry 13 (10), 2743-2749, 2011
1102011
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