| Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018 | 1454 | 2018 |
| Human gut microbiota from autism spectrum disorder promote behavioral symptoms in mice G Sharon, NJ Cruz, DW Kang, MJ Gandal, B Wang, YM Kim, EM Zink, ... Cell 177 (6), 1600-1618. e17, 2019 | 881 | 2019 |
| Beyond shielding: the roles of glycans in the SARS-CoV-2 spike protein L Casalino, Z Gaieb, JA Goldsmith, CK Hjorth, AC Dommer, AM Harbison, ... ACS central science 6 (10), 1722-1734, 2020 | 796 | 2020 |
| Structure-based protein function prediction using graph convolutional networks V Gligorijević, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ... Nature communications 12 (1), 3168, 2021 | 495 | 2021 |
| Consumption of fermented foods is associated with systematic differences in the gut microbiome and metabolome BC Taylor, F Lejzerowicz, M Poirel, JP Shaffer, L Jiang, A Aksenov, ... Msystems 5 (2), 10.1128/msystems. 00901-19, 2020 | 100 | 2020 |
| Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity C Martino, BP Kellman, DR Sandoval, TM Clausen, CA Marotz, SJ Song, ... BioRxiv, 2020.08. 17.238444, 2020 | 36 | 2020 |
| Using machine learning to identify major shifts in human gut microbiome protein family abundance in disease M Yazdani, BC Taylor, JW Debelius, W Li, R Knight, L Smarr 2016 IEEE international conference on big data (big data), 1272-1280, 2016 | 32 | 2016 |
| Structural basis for ligand modulation of the CCR2 conformational landscape BC Taylor, CT Lee, RE Amaro Proceedings of the National Academy of Sciences 116 (17), 8131-8136, 2019 | 31 | 2019 |
| Sequence-structure-function relationships in the microbial protein universe J Koehler Leman, P Szczerbiak, PD Renfrew, V Gligorijevic, D Berenberg, ... Nature communications 14 (1), 2351, 2023 | 20 | 2023 |
| Independent Markov decomposition: Toward modeling kinetics of biomolecular complexes T Hempel, MJ Del Razo, CT Lee, BC Taylor, RE Amaro, F Noé Proceedings of the National Academy of Sciences 118 (31), e2105230118, 2021 | 15 | 2021 |
| Skin inflammation activates intestinal stromal fibroblasts and promotes colitis T Dokoshi, JS Seidman, KJ Cavagnero, F Li, MC Liggins, BC Taylor, ... The Journal of Clinical Investigation 131 (21), 2021 | 12 | 2021 |
| Structure-based protein function prediction using graph convolutional networks. Nat Commun 12: 3168 V Gligorijevic, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ... | 10 | 2021 |
| Depression in individuals coinfected with HIV and HCV is associated with systematic differences in the gut microbiome and metabolome BC Taylor, KC Weldon, RJ Ellis, D Franklin, T Groth, EC Gentry, A Tripathi, ... Msystems 5 (5), 10.1128/msystems. 00465-20, 2020 | 10 | 2020 |
| Impact of vaginal estrogen on the urobiome in postmenopausal women with recurrent urinary tract infection CE Jung, M Estaki, J Chopyk, BC Taylor, A Gonzalez, D McDonald, J Shin, ... Urogynecology 28 (1), 20-26, 2022 | 7 | 2022 |
| Reduced independence in daily living is associated with the gut microbiome in people with HIV and HCV BC Taylor, KC Weldon, RJ Ellis, D Franklin, D McDonald, G Humphrey, ... Msystems 5 (5), 10.1128/msystems. 00528-20, 2020 | 2 | 2020 |
| Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome BC Taylor, M Sheikh Andalibi, S Wandro, KC Weldon, GD Sepich-Poore, ... Microorganisms 11 (4), 1022, 2023 | 1 | 2023 |
| Benchmarking ensemble docking methods in D3R Grand Challenge 4 JL Gan, D Kumar, C Chen, BC Taylor, BR Jagger, RE Amaro, CT Lee Journal of computer-aided molecular design 36 (2), 87-99, 2022 | 1 | 2022 |
| Benchmarking ensemble docking methods as a scientific outreach project JL Gan, D Kumar, C Chen, BC Taylor, BR Jagger, RE Amaro, CT Lee bioRxiv, 2020.10. 02.324343, 2020 | 1 | 2020 |
| Shielding and Beyond: The Roles of Glycans in SARS-CoV-2 Spike Protein (preprint) L Casalino, Z Gaieb, AC Dommer, AM Harbison, CA Fogarty, EP Barros, ... | 1 | 2020 |
| 756 Skin wounding alters the gut microbiome by inducing antimicrobial peptide and mucin production from intestinal epithelia T Dokoshi, B Taylor, K Cavagnero, R Knight, R Gallo Journal of Investigative Dermatology 142 (8), S131, 2022 | | 2022 |
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerified email at ucsd.edu
