| Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors L Haghverdi, ATL Lun, MD Morgan, JC Marioni Nature biotechnology 36 (5), 421-427, 2018 | 2011 | 2018 |
| Diffusion pseudotime robustly reconstructs lineage branching FBFJT Laleh Haghverdi, Maren Büttner, F Alexander Wolf Nature Methods 13, 845–848, 2016 | 1289 | 2016 |
| Diffusion maps for high-dimensional single-cell analysis of differentiation data L Haghverdi, F Buettner, FJ Theis Bioinformatics 31 (18), 2989-2998, 2015 | 668 | 2015 |
| destiny: diffusion maps for large-scale single-cell data in R P Angerer, L Haghverdi, M Büttner, FJ Theis, C Marr, F Buettner Bioinformatics 32 (8), 1241-1243, 2016 | 591 | 2016 |
| Decoding the regulatory network of early blood development from single-cell gene expression measurements V Moignard, S Woodhouse, L Haghverdi, AJ Lilly, Y Tanaka, ... Nature biotechnology 33 (3), 269-276, 2015 | 444 | 2015 |
| Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data A Ocone, L Haghverdi, NS Mueller, FJ Theis Bioinformatics 31 (12), i89-i96, 2015 | 171 | 2015 |
| Single-cell transcriptomics reveals common epithelial response patterns in human acute kidney injury C Hinze, C Kocks, J Leiz, N Karaiskos, A Boltengagen, S Cao, ... Genome Medicine 14 (1), 103, 2022 | 50 | 2022 |
| Sparse stabilization of dynamical systems driven by attraction and avoidance forces M Bongini, M Fornasier Networks and Heterogeneous Media 9 (1), 1-31, 2014 | 34 | 2014 |
| Towards reliable quantification of cell state velocities V Marot-Lassauzaie, BJ Bouman, FD Donaghy, Y Demerdash, ... PLoS Computational Biology 18 (9), e1010031, 2022 | 24 | 2022 |
| Single-cell multi-omics and lineage tracing to dissect cell fate decision-making L Haghverdi, LS Ludwig Stem Cell Reports 18 (1), 13-25, 2023 | 19 | 2023 |
| Correcting batch effects in single-cell RNA sequencing data by matching mutual nearest neighbours L Haghverdi, ATL Lun, MD Morgan, JC Marioni biorxiv, 165118, 2017 | 15 | 2017 |
| Bone marrow immune signatures in multiple myeloma are linked to tumor heterogeneity and treatment outcome S Steiger, R Lutz, N Prokoph, S Palit, SM Tirier, P Reichert, A Baumann, ... Blood 140 (Supplement 1), 2083-2085, 2022 | 4 | 2022 |
| Sparse control of force field dynamics M Bongini, M Fornasier, F Frcöhlich, L Haghverdi 2014 7th International Conference on NETwork Games, COntrol and OPtimization …, 2014 | 4 | 2014 |
| Adjustments to the reference dataset design improve cell type label transfer C Mölbert, L Haghverdi Frontiers in Bioinformatics 3, 1150099, 2023 | 3 | 2023 |
| Transcriptomic responses of the human kidney to acute injury at single cell resolution C Hinze, C Kocks, J Leiz, N Karaiskos, A Boltengagen, CM Skopnik, ... bioRxiv, 2021.12. 15.472619, 2021 | 3 | 2021 |
| Single-cell time series analysis reveals the dynamics of HSPC response to inflammation BJ Bouman, Y Demerdash, S Sood, F Grünschläger, F Pilz, AR Itani, ... Life Science Alliance 7 (3), 2024 | 2 | 2024 |
| Single-cell time series analysis reveals the dynamics of in vivo HSPC responses to inflammation BJ Bouman, Y Demerdash, S Sood, F Grünschläger, F Pilz, AR Itani, ... bioRxiv, 2023.03. 09.531881, 2023 | 2 | 2023 |
| Package ‘scran’ A Lun, K Bach, JK Kim, A Scialdone, L Haghverdi | 2 | 2017 |
| Decoding the transcriptional program for blood development from whole tissue single-cell gene expression measurements V Moignard, S Woodhouse, L Haghverdi, J Lilly, Y Tanaka, A Wilkinson, ... Experimental Hematology 42 (8), S52, 2014 | 2 | 2014 |
| Identifying cancer cells from calling single-nucleotide variants in scRNA-seq data V Marot-Lassauzaie, S Beneyto-Calabuig, B Obermayer, L Velten, ... Bioinformatics 40 (9), btae512, 2024 | 1 | 2024 |
