| Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016 | 230 | 2016 |
| ALF—a simulation framework for genome evolution DA Dalquen, M Anisimova, GH Gonnet, C Dessimoz Molecular biology and evolution 29 (4), 1115-1123, 2012 | 168 | 2012 |
| OMA standalone: orthology inference among public and custom genomes and transcriptomes AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek, AW Vesztrocy, ... Genome research 29 (7), 1152-1163, 2019 | 112 | 2019 |
| Bidirectional best hits miss many orthologs in duplication-rich clades such as plants and animals DA Dalquen, C Dessimoz Genome biology and evolution 5 (10), 1800-1806, 2013 | 98 | 2013 |
| Coalescent Analysis of Phylogenomic Data Confidently Resolves the Species Relationships in the Anopheles gambiae Species Complex Y Thawornwattana, D Dalquen, Z Yang Molecular biology and evolution 35 (10), 2512-2527, 2018 | 73 | 2018 |
| Maximum likelihood implementation of an isolation-with-migration model for three species DA Dalquen, T Zhu, Z Yang Systematic Biology 66 (3), 379-398, 2017 | 60 | 2017 |
| Gene copy number variation and its significance in cyanobacterial phylogeny BE Schirrmeister, DA Dalquen, M Anisimova, HC Bagheri BMC microbiology 12, 1-15, 2012 | 53 | 2012 |
| The impact of gene duplication, insertion, deletion, lateral gene transfer and sequencing error on orthology inference: a simulation study DA Dalquen, AM Altenhoff, GH Gonnet, C Dessimoz PloS one 8 (2), e56925, 2013 | 49 | 2013 |
| Designing simple and efficient Markov chain Monte Carlo proposal kernels Y Thawornwattana, D Dalquen, Z Yang | 22 | 2018 |
| Quest for Orthologs consortium, Toni Gabaldón, Suzanna E Lewis, Paul D Thomas, Erik Sonnhammer, and Christophe Dessimoz. Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature Methods 13, 425-430, 2016 | 8 | 2016 |
| Hardware accelerating audio coding algorithms F Mayer, D Dalquen, T Dettbarn 2006 Digest of Technical Papers International Conference on Consumer …, 2006 | 4 | 2006 |
| Corrigendum: OMA standalone: orthology inference among public and custom genomes and transcriptomes AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek, AW Vesztrocy, ... Genome Research 30 (6), 9382, 2020 | 1 | 2020 |
| OMA standalone: orthology inference among public and custom genomes and transcriptomes (vol 29, pg 1152, 2019) AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek, AW Vesztrocy, ... GENOME RESEARCH 30 (6), 938-938, 2020 | | 2020 |
| Corrigendum: Human auditory ossicles as an alternative optimal source of ancient DNA AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek, AW Vesztrocy, ... Genome Research 30, 427-436, 2020 | | 2020 |
| Simulating evolution for studies in comparative genomics D Dalquen ETH Zurich, 2013 | | 2013 |
