Adaptation of Escherichia coli to Long-Term Serial Passage in Complex Medium: Evidence of Parallel Evolution KE Kram, C Geiger, WM Ismail, H Lee, H Tang, PL Foster, SE Finkel mSystems, 00192-16, 2017 | 43 | 2017 |
Gene finding in metatranscriptomic sequences WM Ismail, Y Ye, H Tang BMC bioinformatics 15 (9), 1-8, 2014 | 36 | 2014 |
Determinants of Base-Pair Substitution Patterns Revealed by Whole-Genome Sequencing of DNA Mismatch Repair Defective Escherichia coli PL Foster, BA Niccum, E Popodi, JP Townes, H Lee, W MohammedIsmail, ... Genetics 209 (4), 1029-1042, 2018 | 25 | 2018 |
MGEScan: a Galaxy-based system for identifying retrotransposons in genomes H Lee, M Lee, W Mohammed Ismail, M Rho, GC Fox, S Oh, H Tang Bioinformatics 32 (16), 2502-2504, 2016 | 20 | 2016 |
The symmetrical wave pattern of base-pair substitution rates across the Escherichia coli chromosome has multiple causes BA Niccum, H Lee, W MohammedIsmail, H Tang, PL Foster Mbio 10 (4), e01226-19, 2019 | 15* | 2019 |
Adaptation of Escherichia coli to long-term batch culture in various rich media LL Westphal, J Lau, Z Negro, IJ Moreno, WI Mohammed, H Lee, H Tang, ... Research in microbiology 169 (3), 145-156, 2018 | 14 | 2018 |
The Spectrum of Replication Errors in the Absence of Error Correction Assayed Across the Whole Genome of Escherichia coli BA Niccum, H Lee, W MohammedIsmail, H Tang, PL Foster Genetics 209 (4), 1043-1054, 2018 | 13 | 2018 |
Deriving a probability density calculator (functional pearl) W Mohammed Ismail, C Shan ACM SIGPLAN Notices 51 (9), 47-59, 2016 | 7 | 2016 |
Clonal reconstruction from time course genomic sequencing data WM Ismail, H Tang BMC genomics 20 (12), 1-11, 2019 | 6 | 2019 |
New complexities of SOS-induced “untargeted” mutagenesis in Escherichia coli as revealed by mutation accumulation and whole-genome sequencing BA Niccum, CP Coplen, H Lee, WM Ismail, H Tang, PL Foster DNA repair 90, 102852, 2020 | 5 | 2020 |
Algorithmic approaches to clonal reconstruction in heterogeneous cell populations WM Ismail, E Nzabarushimana, H Tang Quantitative Biology, 1-11, 2019 | 4 | 2019 |
Preference of amino acids in different protein structural classes: a database analysis WM Ismail, S Chowdhury 2010 4th International Conference on Bioinformatics and Biomedical …, 2010 | 4 | 2010 |
The sequencing and interpretation of the genome obtained from a Serbian individual W Mohammed Ismail, KA Pagel, V Pejaver, SV Zhang, S Casasa, M Mort, ... Plos one 13 (12), e0208901, 2018 | 3 | 2018 |
A maximum-likelihood approach to estimating the insertion frequencies of transposable elements from population sequencing data X Jiang, H Tang, W Mohammed Ismail, M Lynch Molecular biology and evolution 35 (10), 2560-2571, 2018 | 3 | 2018 |
Cell-Type and Allele Specific Distribution of Multiple TET2 Mutations in Two Patients with Chronic Myelomonocytic Leukemia (CMML) T Lasho, C Finke, MM Timm, R Durruthy-Durruthy, M Arribas-Layton, ... Blood 138, 1470, 2021 | | 2021 |
Clonal Hematopoiesis of Indeterminate Potential Is Associated with Increased Age-Independent Morbidity and Mortality in Patients with COVID-19-the Beyond DNA COVID-19 Project M Li, T Lasho, M Binder, WM Ismail, SM Geyer, J Fernandez, Y Kusne, ... Blood 138, 2164, 2021 | | 2021 |
MacroH2A histone variants modulate enhancer activity to repress oncogenic programs and cellular reprogramming WM Ismail, A Mazzone, J Kaur, S Safgren, J Moore-Weiss, M Buciuc, ... | | 2021 |
A scalable algorithm for clonal reconstruction from sparse time course genomic sequencing data WM Ismail, H Tang bioRxiv, 2021 | | 2021 |
Clonal reconstruction from time course genomic sequencing data H Tang, WM Ismail, E Nzabarushimana 2020 Fall Eastern Virtual Sectional Meeting, 2020 | | 2020 |
New complexities of SOS-induced “untargeted” mutagenesis inEscherichia colias revealed by mutation accumulation and whole-genome sequencing BA Niccum, CP Coplen, H Lee, WM Ismail, H Tang, PL Foster | | 2020 |