| Mapping single-cell data to reference atlases by transfer learning M Lotfollahi, M Naghipourfar, MD Luecken, M Khajavi, M Büttner, ... Nature biotechnology 40 (1), 121-130, 2022 | 389 | 2022 |
| Predicting cellular responses to complex perturbations in high‐throughput screens M Lotfollahi, A Klimovskaia Susmelj, C De Donno, L Hetzel, Y Ji, IL Ibarra, ... Molecular systems biology 19 (6), e11517, 2023 | 129 | 2023 |
| Conditional out-of-distribution generation for unpaired data using transfer VAE M Lotfollahi, M Naghipourfar, FJ Theis, FA Wolf Bioinformatics 36 (Supplement_2), i610-i617, 2020 | 89 | 2020 |
| Query to reference single-cell integration with transfer learning M Lotfollahi, M Naghipourfar, MD Luecken, M Khajavi, M Büttner, Z Avsec, ... bioRxiv, 2020.07. 16.205997, 2020 | 42 | 2020 |
| Conditional out-of-sample generation for unpaired data using trVAE M Lotfollahi, M Naghipourfar, FJ Theis, FA Wolf arXiv preprint arXiv:1910.01791, 2019 | 30 | 2019 |
| Cyrus 2D Simulation Team Description Paper 2016 N Zare, A Keshavarzi, SE Beheshtian, H Mowla, A Akbarpour, H Jafari, ... arXiv preprint arXiv:2202.03726, 2022 | 23 | 2022 |
| Revealing the grammar of small RNA secretion using interpretable machine learning B Zirak, M Naghipourfar, A Saberi, D Pouyabahar, A Zarezadeh, L Luo, ... Cell Genomics 4 (4), 2024 | 1 | 2024 |
| A Suite of Foundation Models Captures the Contextual Interplay Between Codons M Naghipourfar, S Chen, MK Howard, CB Macdonald, M Khoroshkin, ... Available at SSRN 5036565, 2024 | | 2024 |
| A long-context RNA foundation model for predicting transcriptome architecture A Saberi, B Choi, S Wang, A Hernández-Corchado, M Naghipourfar, ... bioRxiv, 2024.08. 26.609813, 2024 | | 2024 |
| CYRUS 2D Simulation Team Description Paper 2017 Nader Zare, Ali Najimi, Mahtab Sarvmaili, Aryan Akbarpour, Mohsen ... https://www.robocup2017.org/file/symposium/soccer_sim_2D/TDP_CYRUS.pdf, 2017 | | 2017 |
Fabian J TheisHelmholtz Munich, Technical University of MunichVerified email at helmholtz-muenchen.de
