|Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification|
RH Nilsson, E Kristiansson, M Ryberg, N Hallenberg, KH Larsson
Evolutionary bioinformatics 4, EBO. S653, 2008
|Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data|
J Bengtsson‐Palme, M Ryberg, M Hartmann, S Branco, Z Wang, A Godhe, ...
Methods in ecology and evolution 4 (10), 914-919, 2013
|Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective|
RH Nilsson, M Ryberg, E Kristiansson, K Abarenkov, KH Larsson, ...
PloS one 1 (1), e59, 2006
|Preserving accuracy in GenBank|
TD Bruns, M Blackwell, I Edwards, AFS Taylor, T Horton, N Zhang, ...
Science 319 (5870), 2008
|Structure and function of the global topsoil microbiome|
M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ...
Nature 560 (7717), 233-237, 2018
|Relative importance of coarse and fine woody debris for the diversity of wood-inhabiting fungi in temperate broadleaf forests|
B Nordén, M Ryberg, F Götmark, B Olausson
Biological conservation 117 (1), 1-10, 2004
|Towards global patterns in the diversity and community structure of ectomycorrhizal fungi|
L Tedersoo, M Bahram, M Toots, AG Diedhiou, TW Henkel, R Kjøller, ...
Molecular Ecology 21 (17), 4160-4170, 2012
|The ITS region as a target for characterization of fungal communities using emerging sequencing technologies|
RH Nilsson, M Ryberg, K Abarenkov, E Sjökvist, E Kristiansson
FEMS Microbiology Letters 296 (1), 97-101, 2009
|An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology|
RH Nilsson, V Veldre, M Hartmann, M Unterseher, A Amend, J Bergsten, ...
fungal ecology 3 (4), 284-287, 2010
|A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts|
RH Nilsson, L Tedersoo, M Ryberg, E Kristiansson, M Hartmann, ...
Microbes and environments, ME14121, 2015
|High-level classification of the Fungi and a tool for evolutionary ecological analyses|
L Tedersoo, S Sánchez-Ramírez, U Koljalg, M Bahram, M Döring, ...
Fungal diversity 90 (1), 135-159, 2018
|Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences|
RH Nilsson, L Tedersoo, K Abarenkov, M Ryberg, E Kristiansson, ...
MycoKeys 4, 37, 2012
|Improving ITS sequence data for identification of plant pathogenic fungi|
RH Nilsson, KD Hyde, J Pawłowska, M Ryberg, L Tedersoo, AB Aas, ...
Fungal Diversity 67 (1), 11-19, 2014
|An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web‐based tool for the exploration of fungal diversity|
M Ryberg, E Kristiansson, E Sjökvist, RH Nilsson
New Phytologist 181 (2), 471-477, 2009
|Mining metadata from unidentified ITS sequences in GenBank: A case study in Inocybe (Basidiomycota)|
M Ryberg, RH Nilsson, E Kristiansson, M Töpel, S Jacobsson, E Larsson
BMC Evolutionary Biology 8 (1), 50, 2008
|Dead wood in semi-natural temperate broadleaved woodland: contribution of coarse and fine dead wood, attached dead wood and stumps|
B Nordén, F Götmark, M Tönnberg, M Ryberg
Forest Ecology and Management 194 (1-3), 235-248, 2004
|A software pipeline for processing and identification of fungal ITS sequences|
RH Nilsson, G Bok, M Ryberg, E Kristiansson, N Hallenberg
Source code for biology and medicine 4 (1), 1, 2009
|An open source chimera checker for the fungal ITS region|
RH Nilsson, K Abarenkov, V Veldre, S Nylinder, P De Wit, S Brosché, ...
Molecular Ecology Resources 10 (6), 1076-1081, 2010
|The distance decay of similarity in communities of ectomycorrhizal fungi in different ecosystems and scales|
M Bahram, U Koljalg, PE Courty, AG Diedhiou, R Kjøller, S Polme, ...
Journal of Ecology 101 (5), 1335-1344, 2013
|Ranking higher taxa using divergence times: a case study in Dothideomycetes|
JK Liu, KD Hyde, R Jeewon, AJL Phillips, SSN Maharachchikumbura, ...
Fungal Diversity 84 (1), 75-99, 2017