Chunhui Cai
Chunhui Cai
Verified email at pitt.edu
Title
Cited by
Cited by
Year
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
1742016
Learning a hierarchical representation of the yeast transcriptomic machinery using an autoencoder model
L Chen, C Cai, V Chen, X Lu
BMC bioinformatics 17 (1), 97-107, 2016
592016
Unsupervised deep learning reveals prognostically relevant subtypes of glioblastoma
JD Young, C Cai, X Lu
BMC bioinformatics 18 (11), 5-17, 2017
322017
Trans-species learning of cellular signaling systems with bimodal deep belief networks
L Chen, C Cai, V Chen, X Lu
Bioinformatics 31 (18), 3008-3015, 2015
282015
From genome to phenome: Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer
Y Tao, C Cai, WW Cohen, X Lu
Pacific Symposium on Biocomputing 25, 79-90, 2020
102020
Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference
C Cai, GF Cooper, KN Lu, X Ma, S Xu, Z Zhao, X Chen, Y Xue, AV Lee, ...
PLoS computational biology 15 (7), e1007088, 2019
92019
Tumor-specific causal inference (tci): A bayesian method for identifying causative genome alterations within individual tumors
G Cooper, C Cai, X Lu
bioRxiv, 225631, 2017
72017
Modeling signal transduction from protein phosphorylation to gene expression
C Cai, L Chen, X Jiang, X Lu
Cancer informatics 13, CIN. S13883, 2014
62014
Signal-oriented pathway analyses reveal a signaling complex as a synthetic lethal target for p53 mutations
S Lu, C Cai, G Yan, Z Zhou, Y Wan, V Chen, L Chen, GF Cooper, ...
Cancer research 76 (23), 6785-6794, 2016
22016
Identification of instance-specific somatic genome alterations with functional impact
X Lu, G Cooper, C Cai, S Visweswaran
US Patent App. 16/349,192, 2019
2019
Tumour-specific Causal Inference Discovers Distinct Disease Mechanisms Underlying Cancer Subtypes
Y Xue, G Cooper, C Cai, S Lu, B Hu, X Ma, X Lu
Scientific reports 9 (1), 1-13, 2019
2019
Trans-species learning of cellular signaling with bimodal deep belief networks
L Chen, C Cai, V Chen, X Lu
F1000Research 5, 2014
2014
Breast Cancer Challenge: Team “PittTransMed” places second for Metabric phase of the Challenge
S Lu, C Cai, HU Osmanbeyoglu, L Chen, R Day, G Cooper, X Lu
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Articles 1–13