| Statistical potential for assessment and prediction of protein structures M Shen, A Sali Protein science 15 (11), 2507-2524, 2006 | 2571 | 2006 |
| Protein structure modeling with MODELLER N Eswar, D Eramian, B Webb, MY Shen, A Sali Structural proteomics: high-throughput methods, 145-159, 2008 | 1171 | 2008 |
| MODBASE: a database of annotated comparative protein structure models and associated resources U Pieper, N Eswar, FP Davis, H Braberg, MS Madhusudhan, A Rossi, ... Nucleic acids research 34 (suppl_1), D291-D295, 2006 | 357 | 2006 |
| A composite score for predicting errors in protein structure models D Eramian, M Shen, D Devos, F Melo, A Sali, MA Marti‐Renom Protein science 15 (7), 1653-1666, 2006 | 197 | 2006 |
| Current protocols in bioinformatics N Eswar, MA Marti-Renom, B Webb, MS Madhusudhan, D Eramian, ... Supplement 15 (5.6), 1-5.6, 2006 | 182 | 2006 |
| How well can the accuracy of comparative protein structure models be predicted? D Eramian, N Eswar, MY Shen, A Sali Protein Science 17 (11), 1881-1893, 2008 | 171 | 2008 |
| Long time dynamics of met-enkephalin: comparison of explicit and implicit solvent models M Shen, KF Freed Biophysical Journal 82 (4), 1791-1808, 2002 | 154 | 2002 |
| Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides MH Zaman, MY Shen, RS Berry, KF Freed, TR Sosnick Journal of molecular biology 331 (3), 693-711, 2003 | 152 | 2003 |
| All‐atom fast protein folding simulations: The villin headpiece M Shen, KF Freed Proteins: Structure, Function, and Bioinformatics 49 (4), 439-445, 2002 | 124 | 2002 |
| Extended ab initio studies of the vinylidene–acetylene rearrangement N Chang, M Shen, C Yu The Journal of chemical physics 106 (8), 3237-3242, 1997 | 108 | 1997 |
| Current protocols in protein science N Eswar, B Webb, MA Marti-Renom, MS Madhusudhan, D Eramian, ... Curr. Protoc. Protein Sci 50, 2.9, 2007 | 89 | 2007 |
| Protein complex compositions predicted by structural similarity FP Davis, H Braberg, MY Shen, U Pieper, A Sali, MS Madhusudhan Nucleic acids research 34 (10), 2943-2952, 2006 | 77 | 2006 |
| Large-scale context in protein folding: villin headpiece A Fernández, M Shen, A Colubri, TR Sosnick, RS Berry, KF Freed Biochemistry 42 (3), 664-671, 2003 | 76 | 2003 |
| Minimalist representations and the importance of nearest neighbor effects in protein folding simulations A Colubri, AK Jha, M Shen, A Sali, RS Berry, TR Sosnick, KF Freed Journal of molecular biology 363 (4), 835-857, 2006 | 60 | 2006 |
| The optimal size of a globular protein domain: A simple sphere-packing model M Shen, FP Davis, A Sali Chemical Physics Letters 405 (1-3), 224-228, 2005 | 60 | 2005 |
| Structural modeling of protein interactions by analogy: application to PSD-95 D Korkin, FP Davis, F Alber, T Luong, MY Shen, V Lucic, MB Kennedy, ... PLoS computational biology 2 (11), e153, 2006 | 54 | 2006 |
| A simple topological representation of protein structure: implications for new, fast, and robust structural classification DL Bostick, M Shen, II Vaisman Proteins: Structure, Function, and Bioinformatics 56 (3), 487-501, 2004 | 53 | 2004 |
| Comparative protein structure modeling MS Madhusudhan, MA Marti-Renom, N Eswar, B John, U Pieper, ... The proteomics protocols handbook, 831-860, 2005 | 51 | 2005 |
| Isomers of SO3: Infrared absorption of OSOO in solid argon SH Jou, M Shen, C Yu, YP Lee The Journal of chemical physics 104 (15), 5745-5753, 1996 | 49 | 1996 |
| Computer simulation of met-enkephalin using explicit atom and united atom potentials: similarities, differences, and suggestions for improvement MH Zaman, MY Shen, RS Berry, KF Freed The Journal of Physical Chemistry B 107 (7), 1685-1691, 2003 | 38 | 2003 |
