Sweta Vangaveti
Sweta Vangaveti
The RNA Institute, SUNY, Albany
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Celebrating wobble decoding: Half a century and still much is new
PF Agris, ER Eruysal, A Narendran, VYP Väre, S Vangaveti, ...
RNA biology 15 (4-5), 537-553, 2018
Modification of messenger RNA by 2′-O-methylation regulates gene expression in vivo
BA Elliott, HT Ho, SV Ranganathan, S Vangaveti, O Ilkayeva, H Abou Assi, ...
Nature communications 10 (1), 1-9, 2019
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
Advances in RNA molecular dynamics: a simulator's guide to RNA force fields
S Vangaveti, SV Ranganathan, AA Chen
Wiley Interdisciplinary Reviews: RNA 8 (2), e1396, 2017
Electrostatic correlations at the Stern layer: Physics or chemistry?
A Travesset, S Vangaveti
The Journal of chemical physics 131 (18), 11B608, 2009
Synthesis, base pairing and structure studies of geranylated RNA
R Wang, S Vangaveti, SV Ranganathan, M Basanta-Sanchez, ...
Nucleic acids research 44 (13), 6036-6045, 2016
Integrating ab initio and template-based algorithms for protein–protein complex structure prediction
S Vangaveti, T Vreven, Y Zhang, Z Weng
Bioinformatics 36 (3), 751-757, 2020
General solution to the electric double layer with discrete interfacial charges
S Vangaveti, A Travesset
The Journal of Chemical Physics 137 (6), 064708, 2012
A structural basis for restricted codon recognition mediated by 2-thiocytidine in tRNA containing a wobble position inosine
S Vangaveti, WA Cantara, JL Spears, H DeMirci, FV Murphy IV, ...
Journal of molecular biology 432 (4), 913-929, 2020
A coarse-grained model for assisting the investigation of structure and dynamics of large nucleic acids by ion mobility spectrometry–mass spectrometry
S Vangaveti, RJ D'Esposito, JL Lippens, D Fabris, SV Ranganathan
Physical Chemistry Chemical Physics 19 (23), 14937-14946, 2017
Conditional DnaB protein splicing is reversibly inhibited by zinc in mycobacteria
D Woods, S Vangaveti, I Egbanum, AM Sweeney, Z Li, V Bacot-Davis, ...
Mbio 11 (4), e01403-20, 2020
Nature’s selection of geranyl group as a tRNA modification: the effects of chain length on base-pairing specificity
P Haruehanroengra, S Vangaveti, SV Ranganathan, R Wang, A Chen, ...
ACS Chemical Biology 12 (6), 1504-1513, 2017
Physical Chemistry of a Single TRNA-Modified Nucleoside Regulates Decoding of the Synonymous Lysine Wobble Codon and Affects Type 2 Diabetes
S Vangaveti, SV Ranganathan, PF Agris
The Journal of Physical Chemistry B 126 (6), 1168-1177, 2022
Terpene Chain Length Affects the Base Pairing Discrimination of S-geranyl-2-thiouridine in RNA Duplex
P Haruehanroengra, S Vangaveti, SV Ranganathan, S Mao, MD Su, ...
Iscience 23 (12), 101866, 2020
Performance of ZDOCK and IRAD in CAPRI rounds 39‐45
T Vreven, S Vangaveti, TM Borrman, JC Gaines, Z Weng
Proteins: Structure, Function, and Bioinformatics 88 (8), 1050-1054, 2020
Structural and Binding Effects of Chemical Modifications on Thrombin Binding Aptamer (TBA)
V Valsangkar, S Vangaveti, GW Lee, WM Fahssi, WS Awan, Y Huang, ...
Molecules 26 (15), 4620, 2021
Separation of the Stern and diffuse layer in coarse-grained models: the cases of phosphatidyl serine, phosphatidic acid, and PIP2 monolayers
S Vangaveti, A Travesset
The Journal of Chemical Physics 141 (24), 12B652_1, 2014
Challenges with Simulating Modified RNA: Insights into Role and Reciprocity of Experimental and Computational Approaches
RJ D’Esposito, CA Myers, AA Chen, S Vangaveti
Genes 13 (3), 540, 2022
Post‐transcriptional Modifications Alter Anticodon Loop Dynamics and Codon Recognition in E. coli tRNAArg1,2
KL Sarachan, WA Cantara, S Vangaveti, JL Spears, H DeMirci, ...
The FASEB Journal 30, 807.2-807.2, 2016
Structural Effects of Modifications on Interactions of Thrombin Binding Aptamer with Thrombin: A Molecular Dynamic Study
WM Fahssi, V Valsangkar, GW Lee, S Vangaveti, J Sheng, AA Chen
Biophysical Journal 120 (3), 176a, 2021
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