Inherited mutations in 17 breast cancer susceptibility genes among a large triple-negative breast cancer cohort unselected for family history of breast cancer FJ Couch, SN Hart, P Sharma, AE Toland, X Wang, P Miron, JE Olson, ... Journal of clinical oncology 33 (4), 304, 2015 | 669 | 2015 |
MAP-RSeq: Mayo analysis pipeline for RNA sequencing KR Kalari, AA Nair, JD Bhavsar, DR O’Brien, JI Davila, MA Bockol, J Nie, ... BMC bioinformatics 15, 1-11, 2014 | 266 | 2014 |
Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis JI Davila, MP Arrieta-Montiel, Y Wamboldt, J Cao, J Hagmann, V Shedge, ... BMC biology 9 (1), 1-14, 2011 | 208 | 2011 |
Diversity of the Arabidopsis mitochondrial genome occurs via nuclear-controlled recombination activity MP Arrieta-Montiel, V Shedge, J Davila, AC Christensen, SA Mackenzie Genetics 183 (4), 1261-1268, 2009 | 171 | 2009 |
Clinical characteristics of ovarian cancer classified by BRCA1, BRCA2 and RAD51C status JM Cunningham, MS Cicek, NB Larson, J Davila, C Wang, MC Larson, ... Scientific reports 4 (1), 1-7, 2014 | 144 | 2014 |
Fast and practical algorithms for planted (l, d) motif search J Davila, S Balla, S Rajasekaran IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 544-552, 2007 | 144 | 2007 |
MutS HOMOLOG1 is a nucleoid protein that alters mitochondrial and plastid properties and plant response to high light YZ Xu, MP Arrieta-Montiel, KS Virdi, WBM de Paula, JR Widhalm, ... The Plant Cell 23 (9), 3428-3441, 2011 | 129 | 2011 |
IL‐33 facilitates oncogene‐induced cholangiocarcinoma in mice by an interleukin‐6‐sensitive mechanism D Yamada, S Rizvi, N Razumilava, SF Bronk, JI Davila, MD Champion, ... Hepatology 61 (5), 1627-1642, 2015 | 122 | 2015 |
RNA toxicity and missplicing in the common eye disease fuchs endothelial corneal dystrophy J Du, RA Aleff, E Soragni, K Kalari, J Nie, X Tang, J Davila, JP Kocher, ... Journal of Biological Chemistry 290 (10), 5979-5990, 2015 | 115 | 2015 |
Integrated mate-pair and RNA sequencing identifies novel, targetable gene fusions in peripheral T-cell lymphoma RL Boddicker, GL Razidlo, S Dasari, Y Zeng, G Hu, RA Knudson, ... Blood, The Journal of the American Society of Hematology 128 (9), 1234-1245, 2016 | 114 | 2016 |
Extensive rearrangement of the Arabidopsis mitochondrial genome elicits cellular conditions for thermotolerance V Shedge, J Davila, MP Arrieta-Montiel, S Mohammed, SA Mackenzie Plant physiology 152 (4), 1960-1970, 2010 | 89 | 2010 |
Development and characterization of human-induced pluripotent stem cell-derived cholangiocytes TM De Assuncao, Y Sun, N Jalan-Sakrikar, MC Drinane, BQ Huang, Y Li, ... Laboratory investigation 95 (6), 684-696, 2015 | 84 | 2015 |
Gastroblastoma harbors a recurrent somatic MALAT1–GLI1 fusion gene RP Graham, AA Nair, JI Davila, L Jin, J Jen, WR Sukov, TT Wu, ... Modern Pathology 30 (10), 1443-1452, 2017 | 75 | 2017 |
Contraction of T cell richness in lung cancer brain metastases AS Mansfield, H Ren, S Sutor, V Sarangi, A Nair, J Davila, LR Elsbernd, ... Scientific reports 8 (1), 1-9, 2018 | 73 | 2018 |
Recurrent STAT3-JAK2 fusions in indolent T-cell lymphoproliferative disorder of the gastrointestinal tract A Sharma, N Oishi, RL Boddicker, G Hu, HK Benson, RP Ketterling, ... Blood, The Journal of the American Society of Hematology 131 (20), 2262-2266, 2018 | 67 | 2018 |
Space and time efficient algorithms for planted motif search J Davila, S Balla, S Rajasekaran International Conference on Computational Science (2), 822-829, 2006 | 67 | 2006 |
Cytoplasmic Male Sterility-Associated Chimeric Open Reading Frames Identified by Mitochondrial Genome Sequencing of Four Cajanus Genotypes R Tuteja, RK Saxena, J Davila, T Shah, W Chen, YLI Xiao, G Fan, ... DNA research 20 (5), 485-495, 2013 | 65 | 2013 |
Novel TRAF1‐ALK fusion identified by deep RNA sequencing of anaplastic large cell lymphoma AL Feldman, G Vasmatzis, YW Asmann, J Davila, S Middha, BW Eckloff, ... Genes, Chromosomes and Cancer 52 (11), 1097-1102, 2013 | 59 | 2013 |
qPMS7: A fast algorithm for finding (ℓ, d)-motifs in DNA and protein sequences H Dinh, S Rajasekaran, J Davila PloS one 7 (7), e41425, 2012 | 55 | 2012 |
TP53 mutations, tetraploidy and homologous recombination repair defects in early stage high-grade serous ovarian cancer J Chien, H Sicotte, JB Fan, S Humphray, JM Cunningham, KR Kalli, ... Nucleic acids research 43 (14), 6945-6958, 2015 | 50 | 2015 |