| Nanopore sequencing and assembly of a human genome with ultra-long reads M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ... Nature biotechnology 36 (4), 338-345, 2018 | 1540 | 2018 |
| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 657 | 2022 |
| Telomere-to-telomere assembly of a complete human X chromosome KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ... Nature 585 (7823), 79-84, 2020 | 514 | 2020 |
| Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021 | 494 | 2021 |
| Integrating Hi-C links with assembly graphs for chromosome-scale assembly SK Jay Ghurye, Arang Rhie, Brian P. Walenz, Anthony Schmitt, Siddarth ... PLOS Computational Biology, 2019 | 419 | 2019 |
| De novo assembly and phasing of a Korean human genome JS Seo, A Rhie, J Kim, S Lee, MH Sohn, CU Kim, A Hastie, H Cao, JY Yun, ... Nature 538 (7624), 243-247, 2016 | 325 | 2016 |
| HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads S Nurk, BP Walenz, A Rhie, MR Vollger, GA Logsdon, R Grothe, KH Miga, ... Genome research 30 (9), 1291-1305, 2020 | 320 | 2020 |
| De novo assembly of haplotype-resolved genomes with trio binning S Koren, A Rhie, BP Walenz, AT Dilthey, DM Bickhart, SB Kingan, ... Nature biotechnology 36 (12), 1174-1182, 2018 | 290 | 2018 |
| De novo assembly of the cattle reference genome with single-molecule sequencing BD Rosen, DM Bickhart, RD Schnabel, S Koren, CG Elsik, E Tseng, ... Gigascience 9 (3), giaa021, 2020 | 273 | 2020 |
| Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies A Rhie, B P. Walenz, S Koren, A M. Phillippy Genome Biology 21 (245), 2020 | 254 | 2020 |
| The structure, function, and evolution of a complete human chromosome 8 E Eichler, G Logsdon, M Vollger, PH Hsieh, Y Mao, M Liskovykh, S Koren, ... Nature 593, 101–107, 2021 | 172* | 2021 |
| Weighted minimizer sampling improves long read mapping C Jain, A Rhie, H Zhang, C Chu, BP Walenz, S Koren, AM Phillippy Bioinformatics 36 (Supplement_1), i111-i118, 2020 | 102 | 2020 |
| Complete genomic and epigenetic maps of human centromeres N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ... Science 376 (6588), eabl4178, 2022 | 93 | 2022 |
| FX: an RNA-Seq analysis tool on the cloud D Hong, A Rhie, SS Park, J Lee, YS Ju, S Kim, SB Yu, T Bleazard, ... Bioinformatics 28 (5), 721-723, 2012 | 87 | 2012 |
| A complete reference genome improves analysis of human genetic variation S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ... Science 376 (6588), eabl3533, 2022 | 73 | 2022 |
| Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C ZN Kronenberg, A Rhie, S Koren, GT Concepcion, P Peluso, KM Munson, ... Nature communications 12 (1), 1935, 2021 | 72* | 2021 |
| Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle WY Low, R Tearle, R Liu, S Koren, A Rhie, DM Bickhart, BD Rosen, ... Nature Communications 11 (1), 2071, 2020 | 67 | 2020 |
| Platypus and echidna genomes reveal mammalian biology and evolution Y Zhou, L Shearwin-Whyatt, J Li, Z Song, T Hayakawa, D Stevens, ... Nature, 1-7, 2021 | 64 | 2021 |
| Epigenetic patterns in a complete human genome A Gershman, MEG Sauria, X Guitart, MR Vollger, PW Hook, SJ Hoyt, ... Science 376 (6588), eabj5089, 2022 | 63 | 2022 |
| HLA* LA—HLA typing from linearly projected graph alignments AT Dilthey, AJ Mentzer, R Carapito, C Cutland, N Cereb, SA Madhi, ... Bioinformatics 35 (21), 4394-4396, 2019 | 63 | 2019 |
Sergey KorenAssociate Investigator, NHGRI/NIHVerified email at nih.gov
