| PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs A Marsico, MR Huska, J Lasserre, H Hu, D Vucicevic, A Musahl, UA Orom, ... Genome biology 14 (8), 1-23, 2013 | 108 | 2013 |
| Microprocessor activity controls differential miRNA biogenesis in vivo T Conrad, A Marsico, M Gehre, UA Ørom Cell reports 9 (2), 542-554, 2014 | 67 | 2014 |
| Microprocessor activity controls differential miRNA biogenesis in vivo T Conrad, A Marsico, M Gehre, UA Ørom Cell reports 9 (2), 542-554, 2014 | 67 | 2014 |
| A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy A Marsico, D Labudde, T Sapra, DJ Muller, M Schroeder Bioinformatics 23 (2), e231-e236, 2007 | 42 | 2007 |
| A long non-coding RNA links calreticulin-mediated immunogenic cell removal to RB1 transcription AS Musahl, X Huang, S Rusakiewicz, E Ntini, A Marsico, G Kroemer, ... Oncogene 34 (39), 5046-5054, 2015 | 36 | 2015 |
| Pysster: classification of biological sequences by learning sequence and structure motifs with convolutional neural networks S Budach, A Marsico Bioinformatics 34 (17), 3035-3037, 2018 | 35 | 2018 |
| PureCLIP: capturing target-specific protein–RNA interaction footprints from single-nucleotide CLIP-seq data S Krakau, H Richard, A Marsico Genome biology 18 (1), 1-17, 2017 | 30 | 2017 |
| ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data D Heller, R Krestel, U Ohler, M Vingron, A Marsico Nucleic acids research 45 (19), 11004-11018, 2017 | 26 | 2017 |
| MeMotif: a database of linear motifs in α-helical transmembrane proteins A Marsico, K Scheubert, A Tuukkanen, A Henschel, C Winter, ... Nucleic acids research 38 (suppl_1), D181-D189, 2010 | 22 | 2010 |
| Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin E Ntini, A Louloupi, J Liz, JM Muino, A Marsico, UAV Ørom Nature communications 9 (1), 1-16, 2018 | 18 | 2018 |
| Identification of 170 new long noncoding RNAs in Schistosoma mansoni VF Oliveira, LAG Moares, EA Mota, LK Jannotti-Passos, PMZ Coelho, ... BioMed research international 2018, 2018 | 14 | 2018 |
| Principles of microRNA regulation revealed through modeling microRNA expression quantitative trait loci S Budach, M Heinig, A Marsico Genetics 203 (4), 1629-1640, 2016 | 14 | 2016 |
| Structural fragment clustering reveals novel structural and functional motifs in α-helical transmembrane proteins A Marsico, A Henschel, C Winter, A Tuukkanen, B Vassilev, K Scheubert, ... BMC bioinformatics 11 (1), 1-20, 2010 | 14 | 2010 |
| Structural fragment clustering reveals novel structural and functional motifs in α-helical transmembrane proteins A Marsico, A Henschel, C Winter, A Tuukkanen, B Vassilev, K Scheubert, ... BMC bioinformatics 11 (1), 1-20, 2010 | 14 | 2010 |
| TriPepSVM: de novo prediction of RNA-binding proteins based on short amino acid motifs A Bressin, R Schulte-Sasse, D Figini, EC Urdaneta, BM Beckmann, ... Nucleic acids research 47 (9), 4406-4417, 2019 | 12 | 2019 |
| Understanding of SMFS barriers by means of energy profiles F Dressel, A Marsico, A Tuukkanen, M Schroeder, D Labudde German conference on bioinformatics–GCB 2007, 2007 | 11 | 2007 |
| Zebrafish Expression Ontology of Gene Sets (ZEOGS): a tool to analyze enrichment of zebrafish anatomical terms in large gene sets SV Prykhozhij, A Marsico, SH Meijsing Zebrafish 10 (3), 303-315, 2013 | 10 | 2013 |
| Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis D Thiel, ND Conrad, E Ntini, RX Peschutter, H Siebert, A Marsico BMC bioinformatics 20 (1), 1-16, 2019 | 9 | 2019 |
| Functional impacts of non-coding RNA processing on enhancer activity and target gene expression E Ntini, A Marsico Journal of molecular cell biology 11 (10), 868-879, 2019 | 8 | 2019 |
| Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features LBA e Sousa, I Jonkers, L Syx, I Dunkel, J Chaumeil, C Picard, B Foret, ... Genome research 29 (7), 1087-1099, 2019 | 6 | 2019 |
