Rolf Backofen
Rolf Backofen
Professor für Bioinformatik, Universität Freiburg
Verified email at informatik.uni-freiburg.de
TitleCited byYear
An updated evolutionary classification of CRISPR–Cas systems
KS Makarova, YI Wolf, OS Alkhnbashi, F Costa, SA Shah, SJ Saunders, ...
Nature Reviews Microbiology 13 (11), 722, 2015
10362015
Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering
S Will, K Reiche, IL Hofacker, PF Stadler, R Backofen
PLoS computational biology 3 (4), e65, 2007
4412007
Autosomal dominant immune dysregulation syndrome in humans with CTLA4 mutations
D Schubert, C Bode, R Kenefeck, TZ Hou, JB Wing, A Kennedy, ...
Nature medicine 20 (12), 1410, 2014
3932014
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
A Busch, AS Richter, R Backofen
Bioinformatics 24 (24), 2849-2856, 2008
3892008
Computational molecular biology an introduction
S Levin
Wiley, 2000
3042000
Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA
C Smith, S Heyne, AS Richter, S Will, R Backofen
Nucleic acids research 38 (suppl_2), W373-W377, 2010
2012010
MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons
S Siebert, R Backofen
Bioinformatics 21 (16), 3352-3359, 2005
1972005
LocARNA-P: accurate boundary prediction and improved detection of structural RNAs
S Will, T Joshi, IL Hofacker, PF Stadler, R Backofen
Rna 18 (5), 900-914, 2012
1832012
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains
PR Wright, J Georg, M Mann, DA Sorescu, AS Richter, S Lott, R Kleinkauf, ...
Nucleic acids research 42 (W1), W119-W123, 2014
1772014
Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity
M Hiller, K Huse, K Szafranski, N Jahn, J Hampe, S Schreiber, ...
Nature genetics 36 (12), 1255, 2004
1732004
Pre-mRNA secondary structures influence exon recognition
M Hiller, Z Zhang, R Backofen, S Stamm
PLoS genetics 3 (11), e204, 2007
1672007
Excluding symmetries in constraint-based search
R Backofen, S Will
International Conference on Principles and Practice of Constraint …, 1999
1521999
An information extraction core system for real world german text processing
G Neumann, R Backofen, J Baur, M Becker, C Braun
arXiv preprint cmp-lg/9706023, 1997
1521997
Comparative genomics boosts target prediction for bacterial small RNAs
PR Wright, AS Richter, K Papenfort, M Mann, J Vogel, WR Hess, ...
Proceedings of the National Academy of Sciences 110 (37), E3487-E3496, 2013
1462013
Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis
H Richter, J Zoephel, J Schermuly, D Maticzka, R Backofen, L Randau
Nucleic acids research 40 (19), 9887-9896, 2012
142*2012
Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease
R Gilsbach, S Preissl, BA Grüning, T Schnick, L Burger, V Benes, A Würch, ...
Nature communications 5, 5288, 2014
1412014
Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo
E Holmqvist, PR Wright, L Li, T Bischler, L Barquist, R Reinhardt, ...
The EMBO journal 35 (9), 991-1011, 2016
1392016
Using RNA secondary structures to guide sequence motif finding towards single-stranded regions
M Hiller, R Pudimat, A Busch, R Backofen
Nucleic acids research 34 (17), e117-e117, 2006
1282006
The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal
E Sonnleitner, N Gonzalez, T Sorger‐Domenigg, S Heeb, AS Richter, ...
Molecular microbiology 80 (4), 868-885, 2011
1192011
INFO-RNA—a fast approach to inverse RNA folding
A Busch, R Backofen
Bioinformatics 22 (15), 1823-1831, 2006
1192006
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Articles 1–20