Angelika Merkel
Angelika Merkel
Centro Nacional de Análisis Genómico (CNAG-CRG)
Verified email at cnag.crg.es
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
117882012
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
40232012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ...
Genome research 22 (9), 1775-1789, 2012
38342012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
12242011
Genome analysis of the platypus reveals unique signatures of evolution
WC Warren, LDW Hillier, JAM Graves, E Birney, CP Ponting, F Grützner, ...
Nature 453 (7192), 175, 2008
7172008
Whole-genome fingerprint of the DNA methylome during human B cell differentiation
M Kulis, A Merkel, S Heath, AC Queirós, RP Schuyler, G Castellano, ...
Nature genetics 47 (7), 746, 2015
2082015
Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers
X Agirre, G Castellano, M Pascual, S Heath, M Kulis, V Segura, ...
Genome research 25 (4), 478-487, 2015
1042015
Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time
J Feichtinger, I Hernández, C Fischer, M Hanscho, N Auer, M Hackl, ...
Biotechnology and bioengineering 113 (10), 2241-2253, 2016
892016
Decoding the DNA methylome of mantle cell lymphoma in the light of the entire B cell lineage
AC Queirós, R Beekman, R Vilarrasa-Blasi, M Duran-Ferrer, G Clot, ...
Cancer cell 30 (5), 806-821, 2016
792016
The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia
R Beekman, V Chapaprieta, N Russiñol, R Vilarrasa-Blasi, ...
Nature medicine 24 (6), 868-880, 2018
782018
Detecting short tandem repeats from genome data: opening the software black box
A Merkel, N Gemmell
Briefings in bioinformatics 9 (5), 355-366, 2008
782008
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
S Ecker, L Chen, V Pancaldi, FO Bagger, JM Fernández, ...
Genome biology 18 (1), 1-17, 2017
652017
Dynamics of transcription regulation in human bone marrow myeloid differentiation to mature blood neutrophils
L Grassi, F Pourfarzad, S Ullrich, A Merkel, F Were, ...
Cell reports 24 (10), 2784-2794, 2018
452018
Distinct trends of DNA methylation patterning in the innate and adaptive immune systems
RP Schuyler, A Merkel, E Raineri, L Altucci, E Vellenga, JHA Martens, ...
Cell reports 17 (8), 2101-2111, 2016
412016
Grape RNA-Seq analysis pipeline environment
DG Knowles, M Röder, A Merkel, R Guigó
Bioinformatics 29 (5), 614-621, 2013
292013
Detecting microsatellites in genome data: variance in definitions and bioinformatic approaches cause systematic bias
A Merkel, NJ Gemmell, A Merkel, NJ Gemmell
Evolutionary Bioinformatics 4, EBO. S420, 2008
272008
Chromatin-based classification of genetically heterogeneous AMLs into two distinct subtypes with diverse stemness phenotypes
G Yi, ATJ Wierenga, F Petraglia, P Narang, EM Janssen-Megens, ...
Cell reports 26 (4), 1059-1069. e6, 2019
202019
Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture
I Hernandez, H Dhiman, G Klanert, V Jadhav, N Auer, M Hanscho, ...
Biotechnology and bioengineering 116 (3), 677-692, 2019
182019
gemBS: high throughput processing for DNA methylation data from bisulfite sequencing
A Merkel, M Fernández-Callejo, E Casals, S Marco-Sola, R Schuyler, ...
Bioinformatics 35 (5), 737-742, 2019
142019
Evolution of microsatellite DNA
IMV Jentzsch, ATM Bagshaw, E Buschiazzo, A Merkel, NJ Gemmell
eLS, 2013
122013
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