| Genome-wide analysis of alternative splicing in Caenorhabditis elegans AK Ramani, JA Calarco, Q Pan, S Mavandadi, Y Wang, AC Nelson, ... Genome research 21 (2), 342-348, 2011 | 192 | 2011 |
| High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans AK Ramani, AC Nelson, P Kapranov, I Bell, TR Gingeras, AG Fraser Genome biology 10, 1-18, 2009 | 115 | 2009 |
| An integrated functional genomics approach identifies the regulatory network directed by brachyury (T) in chordoma AC Nelson, N Pillay, S Henderson, N Presneau, R Tirabosco, D Halai, ... The Journal of pathology 228 (3), 274-285, 2012 | 105 | 2012 |
| Single-cell RNA-seq reveals cell type-specific transcriptional signatures at the maternal–foetal interface during pregnancy AC Nelson, AW Mould, EK Bikoff, EJ Robertson Nature communications 7 (1), 11414, 2016 | 90 | 2016 |
| Conserved non-coding elements and cis regulation: actions speak louder than words AC Nelson, FC Wardle Development 140 (7), 1385-1395, 2013 | 89 | 2013 |
| Tbx6, Mesp-b and Ripply1 regulate the onset of skeletal myogenesis in zebrafish SE Windner, RA Doris, CM Ferguson, AC Nelson, G Valentin, H Tan, ... Development 142 (6), 1159-1168, 2015 | 59 | 2015 |
| Global identification of Smad2 and Eomesodermin targets in zebrafish identifies a conserved transcriptional network in mesendoderm and a novel role for Eomesodermin in … AC Nelson, SJ Cutty, M Niini, DL Stemple, P Flicek, C Houart, AEE Bruce, ... BMC biology 12, 1-20, 2014 | 46 | 2014 |
| Blimp1/Prdm1 functions in opposition to Irf1 to maintain neonatal tolerance during postnatal intestinal maturation AW Mould, MAJ Morgan, AC Nelson, EK Bikoff, EJ Robertson PLoS genetics 11 (7), e1005375, 2015 | 41 | 2015 |
| The PR/SET domain zinc finger protein Prdm4 regulates gene expression in embryonic stem cells but plays a nonessential role in the developing mouse embryo D Bogani, MAJ Morgan, AC Nelson, I Costello, JF McGouran, BM Kessler, ... Molecular and cellular biology 33 (19), 3936-3950, 2013 | 35 | 2013 |
| In vivo regulation of the zebrafish endoderm progenitor niche by T-box transcription factors AC Nelson, SJ Cutty, SN Gasiunas, I Deplae, DL Stemple, FC Wardle Cell reports 19 (13), 2782-2795, 2017 | 28 | 2017 |
| A cis-regulatory module upstream of deltaC regulated by Ntla and Tbx16 drives expression in the tailbud, presomitic mesoderm and somites L Jahangiri, AC Nelson, FC Wardle Developmental biology 371 (1), 110-120, 2012 | 20 | 2012 |
| Mapping the chromatin landscape and Blimp1 transcriptional targets that regulate trophoblast differentiation AC Nelson, AW Mould, EK Bikoff, EJ Robertson Scientific Reports 7 (1), 6793, 2017 | 19 | 2017 |
| Fgf-driven Tbx protein activities directly induce myf5 and myod to initiate zebrafish myogenesis DPS Osborn, K Li, SJ Cutty, AC Nelson, FC Wardle, Y Hinits, SM Hughes Development 147 (8), dev184689, 2020 | 17 | 2020 |
| Investigating the molecular guts of endoderm formation using zebrafish DM Figiel, R Elsayed, AC Nelson Briefings in Functional Genomics 20 (6), 394-406, 2021 | 4 | 2021 |
| Eomes function is conserved between zebrafish and mouse and controls left-right organiser progenitor gene expression via interlocking feedforward loops CD Talbot, MD Walsh, SJ Cutty, R Elsayed, E Vlachaki, AEE Bruce, ... Frontiers in Cell and Developmental Biology 10, 982477, 2022 | 2* | 2022 |
| High resolution transcriptome maps for wild-type and NMD mutant C. elegans through development AK Ramani, AC Nelson, P Kapranov, I Bell, TR Gingeras, AG Fraser Genome Biol 10, R101, 2009 | 2 | 2009 |
| Identifying the molecular basis for functional divergence of duplicated SOX factors controlling endoderm formation and left-right patterning in zebrafish S Johal, R Elsayed, KA Panfilio, AC Nelson bioRxiv, 2024.02. 06.579092, 2024 | | 2024 |
| Characterisation of cis-regulatory modules controlling gene expression within sox17+ lineages during zebrafish embryonic development R Elsayed University of Warwick, 2021 | | 2021 |
| Correction: Publisher Correction: Single-cell RNA-seq reveals cell type-specific transcriptional signatures at the maternal–foetal interface during pregnancy AC Nelson, AW Mould, EK Bikoff, EJ Robertson Nature Communications 9 (1), 1-1, 2018 | | 2018 |
| 18-P003 A gene regulatory network for mesoderm directed by zebrafish No tail R Morley, K Lachani, D Keefe, A Nelson, M Gilchrist, P Flicek, J Smith, ... Mechanisms of Development 126, S285-S286, 2009 | | 2009 |
