Monitoring hippocampal glycine with the computationally designed optical sensor GlyFS WH Zhang, MK Herde, JA Mitchell, JH Whitfield, AB Wulff, V Vongsouthi, ... Nature chemical biology 14 (9), 861-869, 2018 | 63 | 2018 |
T-dependent B cell responses to Plasmodium induce antibodies that form a high-avidity multivalent complex with the circumsporozoite protein CR Fisher, HJ Sutton, JA Kaczmarski, HA McNamara, B Clifton, J Mitchell, ... PLoS pathogens 13 (7), e1006469, 2017 | 49 | 2017 |
Structural and evolutionary approaches to the design and optimization of fluorescence-based small molecule biosensors JA Kaczmarski, JA Mitchell, MA Spence, V Vongsouthi, CJ Jackson Current Opinion in Structural Biology 57, 31-38, 2019 | 30 | 2019 |
Open force field BespokeFit: automating bespoke torsion parametrization at scale JT Horton, S Boothroyd, J Wagner, JA Mitchell, T Gokey, DL Dotson, ... Journal of chemical information and modeling 62 (22), 5622-5633, 2022 | 19 | 2022 |
Openmm 8: Molecular dynamics simulation with machine learning potentials P Eastman, R Galvelis, RP Peláez, CRA Abreu, SE Farr, E Gallicchio, ... The Journal of Physical Chemistry B 128 (1), 109-116, 2023 | 13 | 2023 |
A Rationally and Computationally Designed Fluorescent Biosensor for d-Serine V Vongsouthi, JH Whitfield, P Unichenko, JA Mitchell, B Breithausen, ... ACS sensors 6 (11), 4193-4205, 2021 | 12* | 2021 |
Rangefinder: A semisynthetic FRET sensor design algorithm JA Mitchell, JH Whitfield, WH Zhang, C Henneberger, H Janovjak, ... Acs Sensors 1 (11), 1286-1290, 2016 | 11 | 2016 |
Computational design and experimental characterisation of a stable human heparanase variant C Whitefield, N Hong, JA Mitchell, CJ Jackson RSC Chemical Biology 3 (3), 341-349, 2022 | 6 | 2022 |
Method for developing optical sensors using a synthetic dye-fluorescent protein FRET pair and computational modeling and assessment JA Mitchell, WH Zhang, MK Herde, C Henneberger, H Janovjak, ... Synthetic Protein Switches: Methods and Protocols, 89-99, 2017 | 3 | 2017 |
Development and benchmarking of an open, self-consistent force field for proteins and small molecules from the open force field initiative CE Cavender, PK Behara, S Boothroyd, DL Dotson, JT Horton, JA Mitchell, ... Biophysical Journal 122 (3), 421a, 2023 | 1 | 2023 |
Capturing the Dynamics of a Spring-Loaded Protein JA Mitchell, ML O’Mara Structure 25 (7), 963-964, 2017 | 1 | 2017 |
Molecular Dynamics for Synthetic Biology JA Mitchell PQDT-Global, 2020 | | 2020 |