| A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism H Lu, F Li, BJ Sánchez, Z Zhu, G Li, I Domenzain, S Marcišauskas, ... Nature communications 10 (1), 3586, 2019 | 265 | 2019 |
| Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction F Li, L Yuan, H Lu, G Li, Y Chen, MKM Engqvist, EJ Kerkhoven, J Nielsen Nature Catalysis 5 (8), 662-672, 2022 | 134 | 2022 |
| Systematic design and in vitro validation of novel one-carbon assimilation pathways X Yang, Q Yuan, H Luo, F Li, Y Mao, X Zhao, J Du, P Li, X Ju, Y Zheng, ... Metabolic Engineering 56, 142-153, 2019 | 72 | 2019 |
| SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework BJ Sánchez, F Li, EJ Kerkhoven, J Nielsen BMC systems biology 13, 1-9, 2019 | 48 | 2019 |
| Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models Q Yuan, T Huang, P Li, T Hao, F Li, H Ma, Z Wang, X Zhao, T Chen, ... PloS one 12 (1), e0169437, 2017 | 48 | 2017 |
| Genome-scale modeling of yeast metabolism: retrospectives and perspectives Y Chen, F Li, J Nielsen FEMS Yeast Research 22 (1), foac003, 2022 | 34 | 2022 |
| GotEnzymes: an extensive database of enzyme parameter predictions F Li, Y Chen, M Anton, J Nielsen Nucleic Acids Research 51 (D1), D583-D586, 2023 | 26 | 2023 |
| Yeast optimizes metal utilization based on metabolic network and enzyme kinetics Y Chen, F Li, J Mao, Y Chen, J Nielsen Proceedings of the National Academy of Sciences 118 (12), e2020154118, 2021 | 25 | 2021 |
| Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints F Li, Y Chen, Q Qi, Y Wang, L Yuan, M Huang, IE Elsemman, A Feizi, ... Nature communications 13 (1), 2969, 2022 | 22 | 2022 |
| Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection H Lu, F Li, L Yuan, I Domenzain, R Yu, H Wang, G Li, Y Chen, B Ji, ... Molecular Systems Biology 17 (10), e10427, 2021 | 18 | 2021 |
| Different routes of protein folding contribute to improved protein production in Saccharomyces cerevisiae Q Qi, F Li, R Yu, MKM Engqvist, V Siewers, J Fuchs, J Nielsen Mbio 11 (6), 10.1128/mbio. 02743-20, 2020 | 18 | 2020 |
| A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism. Nat Commun. 2019; 10: 3586 H Lu, F Li, BJ Sánchez, Z Zhu, G Li, I Domenzain, S Marcišauskas, ... | 13 | 2019 |
| An enzymatic assay for high-throughput screening of cytidine-producing microbial strains H Dong, Y Liu, X Zu, N Li, F Li, D Zhang PloS one 10 (3), e0121612, 2015 | 13 | 2015 |
| Sánchez BJet al H Lu, F Li A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for …, 2019 | 11 | 2019 |
| Evaluating accessibility, usability and interoperability of genome-scale metabolic models for diverse yeasts species I Domenzain, F Li, EJ Kerkhoven, V Siewers FEMS Yeast Research 21 (1), foab002, 2021 | 10 | 2021 |
| Identification of a new gene yecC involved in threonine export in Escherichia coli Y Xu, Y Liu, F Li, G Cao, P Zheng, J Sun, J Wen, D Zhang FEMS Microbiology Letters 364 (17), fnx174, 2017 | 9 | 2017 |
| Genome-scale metabolic model analysis indicates low energy production efficiency in marine ammonia-oxidizing archaea F Li, W Xie, Q Yuan, H Luo, P Li, T Chen, X Zhao, Z Wang, H Ma AMB Express 8, 1-12, 2018 | 8 | 2018 |
| HGTphyloDetect: facilitating the identification and phylogenetic analysis of horizontal gene transfer L Yuan, H Lu, F Li, J Nielsen, EJ Kerkhoven Briefings in Bioinformatics 24 (2), bbad035, 2023 | 5 | 2023 |
| Genome scale modeling of the protein secretory pathway reveals novel targets for improved recombinant protein production in yeast F Li, Y Chen, Q Qi, Y Wang, L Yuan, M Huang, IE Elsemman, A Feizi, ... BioRxiv, 2021.10. 16.464630, 2021 | 5 | 2021 |
| Synthesis, crystal structures, antibacterial activities, and fluorescence properties of Schiff base ligand and Its nickel (II) complex X Zhang, FR Li, C Sun, M Huang, H Zhang Russian Journal of Coordination Chemistry 40, 432-438, 2014 | 5 | 2014 |
Jens NielsenProfessor in Systems Biology, Chalmers University of Technology, SwedenVerified email at chalmers.se
