Rachel Karchin
Rachel Karchin
Professor of Biomedical Engineering, Oncology and Computer Science, Johns Hopkins University
Verified email at jhu.edu - Homepage
Title
Cited by
Cited by
Year
An integrated genomic analysis of human glioblastoma multiforme
DW Parsons, S Jones, X Zhang, JCH Lin, RJ Leary, P Angenendt, ...
science 321 (5897), 1807-1812, 2008
55062008
Core signaling pathways in human pancreatic cancers revealed by global genomic analyses
S Jones, X Zhang, DW Parsons, JCH Lin, RJ Leary, P Angenendt, ...
science 321 (5897), 1801-1806, 2008
38172008
Integrated genomic analyses of ovarian carcinoma
Cancer Genome Atlas Research Network
Nature 474 (7353), 609, 2011
37412011
The genomic landscapes of human breast and colorectal cancers
LD Wood, DW Parsons, S Jones, J Lin, T Sj÷blom, RJ Leary, D Shen, ...
Science 318 (5853), 1108-1113, 2007
33362007
Integrated genomic analyses of ovarian carcinoma
D Bell, A Berchuck, M Birrer, J Chien, DW Cramer, F Dao, R Dhir, ...
Nature Publishing Group, 2011
11832011
Comprehensive characterization of cancer driver genes and mutations
MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ...
Cell 173 (2), 371-385. e18, 2018
9172018
Accumulation of driver and passenger mutations during tumor progression
I Bozic, T Antal, H Ohtsuki, H Carter, D Kim, S Chen, R Karchin, ...
Proceedings of the National Academy of Sciences 107 (43), 18545-18550, 2010
7412010
The genetic landscape of the childhood cancer medulloblastoma
DW Parsons, M Li, X Zhang, S Jones, RJ Leary, JCH Lin, SM Boca, ...
science 331 (6016), 435-439, 2011
7032011
Whole-exome sequencing of neoplastic cysts of the pancreas reveals recurrent mutations in components of ubiquitin-dependent pathways
J Wu, Y Jiao, M Dal Molin, A Maitra, RF De Wilde, LD Wood, JR Eshleman, ...
Proceedings of the National Academy of Sciences 108 (52), 21188-21193, 2011
5162011
Defining the disease liability of variants in the cystic fibrosis transmembrane conductance regulator gene
PR Sosnay, KR Siklosi, F Van Goor, K Kaniecki, H Yu, N Sharma, ...
Nature genetics 45 (10), 1160-1167, 2013
4872013
MODBASE: a database of annotated comparative protein structure models and associated resources
U Pieper, N Eswar, FP Davis, H Braberg, MS Madhusudhan, A Rossi, ...
Nucleic acids research 34 (suppl_1), D291-D295, 2006
4802006
Exome sequencing identifies frequent inactivating mutations in BAP1, ARID1A and PBRM1 in intrahepatic cholangiocarcinomas
Y Jiao, TM Pawlik, RA Anders, FM Selaru, MM Streppel, DJ Lucas, ...
Nature genetics 45 (12), 1470-1473, 2013
4782013
Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations
H Carter, S Chen, L Isik, S Tyekucheva, VE Velculescu, KW Kinzler, ...
Cancer research 69 (16), 6660-6667, 2009
4482009
Evolution of neoantigen landscape during immune checkpoint blockade in non–small cell lung cancer
V Anagnostou, KN Smith, PM Forde, N Niknafs, R Bhattacharya, J White, ...
Cancer discovery 7 (3), 264-276, 2017
4152017
Classifying G-protein coupled receptors with support vector machines
R Karchin, K Karplus, D Haussler
Bioinformatics 18 (1), 147-159, 2002
3622002
Combining local‐structure, fold‐recognition, and new fold methods for protein structure prediction
K Karplus, R Karchin, J Draper, J Casper, Y Mandel‐Gutfreund, ...
Proteins: Structure, Function, and Bioinformatics 53 (S6), 491-496, 2003
3542003
The genomic landscape of response to EGFR blockade in colorectal cancer
A Bertotti, E Papp, S Jones, V Adleff, V Anagnostou, B Lupo, M Sausen, ...
Nature 526 (7572), 263-267, 2015
3122015
A combination of molecular markers and clinical features improve the classification of pancreatic cysts
S Springer, Y Wang, M Dal Molin, DL Masica, Y Jiao, I Kinde, A Blackford, ...
Gastroenterology 149 (6), 1501-1510, 2015
2922015
High grade serous ovarian carcinomas originate in the fallopian tube
SI Labidi-Galy, E Papp, D Hallberg, N Niknafs, V Adleff, M Noe, ...
Nature communications 8 (1), 1-11, 2017
2892017
Identifying Mendelian disease genes with the variant effect scoring tool
H Carter, C Douville, PD Stenson, DN Cooper, R Karchin
BMC genomics 14 (3), 1-16, 2013
2602013
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Articles 1–20