Martin Steinegger
Martin Steinegger
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MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
M Steinegger, J Söding
Nature biotechnology 35 (11), 1026-1028, 2017
Uniclust databases of clustered and deeply annotated protein sequences and alignments
M Mirdita, L von den Driesch, C Galiez, MJ Martin, J Söding, M Steinegger
Nucleic Acids Research, 2016
Clustering huge protein sequence sets in linear time
M Steinegger, J Söding
Nature communications 9 (1), 1-8, 2018
HH-suite3 for fast remote homology detection and deep protein annotation
M Steinegger, M Meier, M Mirdita, H Vöhringer, SJ Haunsberger, J Söding
BMC Bioinformatics 20, 2019
MMseqs software suite for fast and deep clustering and searching of large protein sequence sets
M Hauser, M Steinegger, J Söding
Bioinformatics 32 (9), 1323-1330, 2016
Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold
M Steinegger, M Mirdita, J Söding
Nature Methods 16, 603–606, 2019
Cloud prediction of protein structure and function with PredictProtein for Debian
L Kaján, G Yachdav, E Vicedo, M Steinegger, M Mirdita, C Angermüller, ...
BioMed Research International 2013, 2013
MMseqs2 desktop and local web server app for fast, interactive sequence searches
M Mirdita, M Steinegger, J Söding
Bioinformatics 35 (16), 2856–2858, 2019
HFSP: high speed homology-driven function annotation of proteins
Y Mahlich, M Steinegger, B Rost, Y Bromberg
Bioinformatics 34 (13), i304-i312, 2018
Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank
M Steinegger, SL Salzberg
Genome Biology 21, 2020
ProtTrans: Towards Cracking the Language of Life’s Code Through Self-Supervised Deep Learning and High Performance Computing
A Elnaggar, M Heinzinger, C Dallago, G Rehawi, Y Wang, L Jones, ...
biorxiv, 2020
Highly multiplexed oligonucleotide probe-ligation testing enables efficient extraction-free SARS-CoV-2 detection and viral genotyping
JJ Credle, M Robinson, J Gunn, D Monaco, B Sie, AL Tchir, J Hardick, ...
bioRxiv, 2020
Light into the darkness: Unifying the known and unknown coding sequence space in microbiome analyses
C Vanni, MS Schechter, S Acinas, A Barberán, PL Buttigieg, ...
BioRxiv, 2020
Metagenomic association analysis of gut symbiont Lactobacillus reuteri without host-specific genome isolation
S Park, M Steinegger, HS Cho, J Chun
bioRxiv, 2020
Ultrafast and sensitive sequence search and clustering methods in the era of next generation sequencing
M Steinegger
Technische Universität München, 2018
J Söding, M Remmert, A Biegert, A Hauser, M Meier, M Steinegger
Cloud Architecture for Full In Silico Mutagenesis
M Steinegger, M Mirdita, B Rost
Supporting Translational and Personalzed Medicine with SOA, Grid, and Cloud, 0
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