| Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential L Wampach, A Heintz-Buschart, JV Fritz, J Ramiro-Garcia, J Habier, ... Nature communications 9 (1), 5091, 2018 | 272 | 2018 |
| IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses S Narayanasamy, Y Jarosz, EEL Muller, A Heintz-Buschart, M Herold, ... Genome biology 17, 1-21, 2016 | 128 | 2016 |
| Deep neural networks outperform human expert's capacity in characterizing bioleaching bacterial biofilm composition A Buetti-Dinh, V Galli, S Bellenberg, O Ilie, M Herold, S Christel, ... Biotechnology Reports 22, e00321, 2019 | 113 | 2019 |
| Using metabolic networks to resolve ecological properties of microbiomes EEL Muller, K Faust, S Widder, M Herold, SM Arbas, P Wilmes Current Opinion in Systems Biology 8, 73-80, 2018 | 80 | 2018 |
| Multi-omics Reveals the Lifestyle of the Acidophilic, Mineral-Oxidizing Model Species Leptospirillum ferriphilumT S Christel, M Herold, S Bellenberg, M El Hajjami, A Buetti-Dinh, IV Pivkin, ... Applied and environmental microbiology 84 (3), e02091-17, 2018 | 75 | 2018 |
| Evolving social contact patterns during the COVID-19 crisis in Luxembourg A Latsuzbaia, M Herold, JP Bertemes, J Mossong PloS one 15 (8), e0237128, 2020 | 70 | 2020 |
| Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance M Herold, S Martínez Arbas, S Narayanasamy, AR Sheik, ... Nature communications 11 (1), 5281, 2020 | 67 | 2020 |
| Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics S Martínez Arbas, S Narayanasamy, M Herold, LA Lebrun, ... Nature microbiology 6 (1), 123-135, 2021 | 46 | 2021 |
| Weak Iron Oxidation by Sulfobacillus thermosulfidooxidans Maintains a Favorable Redox Potential for Chalcopyrite Bioleaching S Christel, M Herold, S Bellenberg, A Buetti-Dinh, M El Hajjami, IV Pivkin, ... Frontiers in microbiology 9, 3059, 2018 | 39 | 2018 |
| Automated microscopic analysis of metal sulfide colonization by acidophilic microorganisms S Bellenberg, A Buetti-Dinh, V Galli, O Ilie, M Herold, S Christel, ... Applied and environmental microbiology 84 (20), e01835-18, 2018 | 25 | 2018 |
| Genome sequencing of SARS-CoV-2 allows monitoring of variants of concern through wastewater M Herold, AF d’Hérouël, P May, F Delogu, A Wienecke-Baldacchino, ... Water 13 (21), 3018, 2021 | 21 | 2021 |
| Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and … A Buetti-Dinh, M Herold, S Christel, M El Hajjami, F Delogu, O Ilie, ... BMC bioinformatics 21, 1-15, 2020 | 13 | 2020 |
| Challenges, strategies, and perspectives for reference-independent longitudinal multi-omic microbiome studies S Martínez Arbas, SB Busi, P Queirós, L de Nies, M Herold, P May, ... Frontiers in Genetics 12, 666244, 2021 | 12 | 2021 |
| First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ EEL Muller, S Narayanasamy, M Zeimes, CC Laczny, LA Lebrun, ... Standards in Genomic Sciences 12, 1-8, 2017 | 11 | 2017 |
| Systems biology of acidophile biofilms for efficient metal extraction A Buetti-Dinh, M Herold, S Christel, ME Hajjami, S Bellenberg, O Ilie, ... Scientific data 7 (1), 215, 2020 | 9 | 2020 |
| Soil ph, calcium content and bacteria as major factors responsible for the distribution of the known fraction of the DNA bacteriophage populations in soils of Luxembourg P Florent, HM Cauchie, M Herold, S Jacquet, L Ogorzaly Microorganisms 10 (7), 1458, 2022 | 8 | 2022 |
| Identification, recovery, and refinement of hitherto undescribed population-level genomes from the human gastrointestinal tract CC Laczny, EEL Muller, A Heintz-Buschart, M Herold, LA Lebrun, ... Frontiers in Microbiology 7, 884, 2016 | 8 | 2016 |
| Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential. Nat Commun 9: 5091 L Wampach, A Heintz-Buschart, JV Fritz, J Ramiro-Garcia, J Habier, ... | 4 | 2018 |
| IMP: a pipeline for reproducible integrated metagenomic and metatranscriptomic analyses S Narayanasamy, Y Jarosz, EEL Muller, CC Laczny, M Herold, A Kaysen, ... bioRxiv, 039263, 2016 | 3 | 2016 |
| Environmental dynamics of Campylobacter jejuni genotypes circulating in Luxembourg: what is the role of wild birds? L Hock, M Herold, C Walczak, A Schoos, C Penny, HM Cauchie, ... Microbial Genomics 9 (6), 001031, 2023 | 2 | 2023 |
