Jens Stoye
Jens Stoye
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Zitiert von
Zitiert von
REPuter: the manifold applications of repeat analysis on a genomic scale
S Kurtz, JV Choudhuri, E Ohlebusch, C Schleiermacher, J Stoye, ...
Nucleic acids research 29 (22), 4633-4642, 2001
Severe COVID-19 is marked by a dysregulated myeloid cell compartment
J Schulte-Schrepping, N Reusch, D Paclik, K Baßler, S Schlickeiser, ...
Cell 182 (6), 1419-1440. e23, 2020
Updating benchtop sequencing performance comparison
S Jünemann, FJ Sedlazeck, K Prior, A Albersmeier, U John, J Kalinowski, ...
Nature biotechnology 31 (4), 294-296, 2013
A unifying view of genome rearrangements
A Bergeron, J Mixtacki, J Stoye
Algorithms in Bioinformatics: 6th International Workshop, WABI 2006, Zurich …, 2006
Phylogenetic classification of short environmental DNA fragments
L Krause, NN Diaz, A Goesmann, S Kelley, TW Nattkemper, F Rohwer, ...
Nucleic acids research 36 (7), 2230-2239, 2008
Rose: generating sequence families.
J Stoye, D Evers, F Meyer
Bioinformatics (Oxford, England) 14 (2), 157-163, 1998
Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor
L Krause, NN Diaz, RA Edwards, KH Gartemann, H Krömeke, ...
Journal of biotechnology 136 (1-2), 91-101, 2008
Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms
A Mellmann, T Weniger, C Berssenbrügge, J Rothgänger, M Sammeth, ...
BMC microbiology 7 (1), 1-6, 2007
Longitudinal multi-omics analyses identify responses of megakaryocytes, erythroid cells, and plasmablasts as hallmarks of severe COVID-19
JP Bernardes, N Mishra, F Tran, T Bahmer, L Best, JI Blase, D Bordoni, ...
Immunity 53 (6), 1296-1314. e9, 2020
Efficient q-Gram Filters for Finding All ε-Matches over a Given Length
KR Rasmussen, J Stoye, EW Myers
Research in Computational Molecular Biology: 9th Annual International …, 2005
Bacterial community shift in treated periodontitis patients revealed by ion torrent 16S rRNA gene amplicon sequencing
S Jünemann, K Prior, R Szczepanowski, I Harks, B Ehmke, A Goesmann, ...
Public Library of Science 7 (8), e41606, 2012
DCA: an efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment
J Stoye, V Moulton, AWM Dress
Bioinformatics 13 (6), 625-626, 1997
Linear time algorithms for finding and representing all the tandem repeats in a string
D Gusfield, J Stoye
Journal of Computer and System Sciences 69 (4), 525-546, 2004
Benchmarking tools for the alignment of functional noncoding DNA
DA Pollard, CM Bergman, J Stoye, SE Celniker, MB Eisen
BMC bioinformatics 5, 1-17, 2004
Taxonomic classification of metagenomic shotgun sequences with CARMA3
W Gerlach, J Stoye
Nucleic acids research 39 (14), e91-e91, 2011
Finding All Common Intervals of k Permutations
GM Landau, S Heber, J Stoye
Combinatorial Pattern Matching: 12th Annual Symposium, CPM 2001 Jerusalem …, 2001
r2cat: synteny plots and comparative assembly
P Husemann, J Stoye
Bioinformatics 26 (4), 570-571, 2010
Multiple sequence alignment with the divide-and-conquer method
J Stoye
Gene 211 (2), GC45-GC56, 1998
Efficient implementation of lazy suffix trees
R Giegerich, S Kurtz, J Stoye
Software: Practice and Experience 33 (11), 1035-1049, 2003
Partitioning biological data with transitivity clustering
T Wittkop, D Emig, S Lange, S Rahmann, M Albrecht, JH Morris, S Böcker, ...
Nature methods 7 (6), 419-420, 2010
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