Dominique Sydow
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Ligand binding ensembles determine graded agonist efficacies at a G protein-coupled receptor
A Bock, M Bermudez, F Krebs, C Matera, B Chirinda, D Sydow, ...
Journal of Biological Chemistry 291 (31), 16375-16389, 2016
More than a look into a crystal ball: Protein structure elucidation guided by molecular dynamics simulations
M Bermudez, J Mortier, C Rakers, D Sydow, G Wolber
Drug Discovery Today 21 (11), 1799-1805, 2016
Advances and challenges in computational target prediction
D Sydow, L Burggraaff, A Szengel, HWT van Vlijmen, AP IJzerman, ...
Journal of chemical information and modeling 59 (5), 1728-1742, 2019
Molecular insight on the binding of NNRTI to K103N mutated HIV-1 RT: molecular dynamics simulations and dynamic pharmacophore analysis
B Nizami, D Sydow, G Wolber, B Honarparvar
Molecular Biosystems 12 (11), 3385-3395, 2016
Arginase structure and inhibition: Catalytic site plasticity reveals new modulation possibilities
J Mortier, JRC Prévost, D Sydow, S Teuchert, C Omieczynski, ...
Scientific reports 7 (1), 1-9, 2017
TeachOpenCADD: a teaching platform for computer-aided drug design using open source packages and data
D Sydow, A Morger, M Driller, A Volkamer
Journal of cheminformatics 11 (1), 1-7, 2019
Ribo-seQC: comprehensive analysis of cytoplasmic and organellar ribosome profiling data
L Calviello, D Sydow, D Harnett, U Ohler
bioRxiv, 601468, 2019
TeachOpenCADD-KNIME: a teaching platform for computer-aided drug design using KNIME workflows
D Sydow, M Wichmann, J Rodríguez-Guerra, D Goldmann, G Landrum, ...
Journal of chemical information and modeling 59 (10), 4083-4086, 2019
Dynophores: novel dynamic pharmacophores
D Sydow
Humboldt-Universität zu Berlin, Lebenswissenschaftliche Fakultät, 2015
KinFragLib: Exploring the kinase inhibitor space using subpocket-focused fragmentation and recombination
D Sydow, P Schmiel, J Mortier, A Volkamer
Journal of Chemical Information and Modeling 60 (12), 6081-6094, 2020
105 Stabilization effects induced by modified nucleotides in tRNA T-loop motifs
D Sydow, F Leonarski, L D’Ascenzo, P Auffinger
Journal of Biomolecular Structure and Dynamics 33 (sup1), 66-66, 2015
Teaching Computer-Aided Drug Design Using TeachOpenCADD
D Sydow, J Rodríguez-Guerra, A Volkamer
Teaching Programming across the Chemistry Curriculum, 135-158, 2021
Analyzing Kinase Similarity in Small Molecule and Protein Structural Space to Explore the Limits of Multi-Target Screening
D Schmidt, MM Scharf, D Sydow, E Aßmann, M Martí-Solano, M Keul, ...
Molecules 26 (3), 629, 2021
Genome-wide analysis of actively translated open reading frames using riboTaper/ORFquant
D Harnett, E Meerdink, L Calviello, D Sydow, U Ohler
Ribosome Profiling, 331-346, 2021
Supporting Information: KinFragLib: Exploring the Kinase Inhibitor Space Using Subpocket-Focused Fragmentation and Recombination
D Sydow, P Schmiel, J Mortier, A Volkamer
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