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Sandeep S. Amberkar
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Meta-analysis of the Alzheimer’s disease human brain transcriptome and functional dissection in mouse models
YW Wan, R Al-Ouran, CG Mangleburg, TM Perumal, TV Lee, K Allison, ...
Cell reports 32 (2), 2020
2072020
KnetMiner: a comprehensive approach for supporting evidence‐based gene discovery and complex trait analysis across species
K Hassani‐Pak, A Singh, M Brandizi, J Hearnshaw, JD Parsons, ...
Plant Biotechnology Journal 19 (8), 1670-1678, 2021
692021
Whole‐genome sequencing reveals new Alzheimer's disease–associated rare variants in loci related to synaptic function and neuronal development
D Prokopenko, SL Morgan, K Mullin, O Hofmann, B Chapman, R Kirchner, ...
Alzheimer's & Dementia 17 (9), 1509-1527, 2021
612021
Rif2 promotes a telomere fold-back structure through Rpd3L recruitment in budding yeast
H Poschke, M Dees, M Chang, S Amberkar, L Kaderali, R Rothstein, ...
Public Library of Science 8 (9), e1002960, 2012
442012
Meta-analysis of the human brain transcriptome identifies heterogeneity across human AD coexpression modules robust to sample collection and methodological approach
BA Logsdon, TM Perumal, V Swarup, M Wang, C Funk, C Gaiteri, M Allen, ...
BioRxiv, 510420, 2019
422019
High-throughput RNA interference screens integrative analysis: Towards a comprehensive understanding of the virus-host interplay
S Amberkar, NA Kiani, R Bartenschlager, L Kaderali
World Journal of Virology 2 (2), 2013
262013
Accelerating medicines partnership-Alzheimer’s disease consortium
YW Wan, R Al-Ouran, CG Mangleburg, TM Perumal, TV Lee, K Allison, ...
Carter GW, Collier DA, Golde TE, Levey AI, Bennett DA, Estrada K, Townsend …, 2020
122020
An integrative approach for a network based meta-analysis of viral RNAi screens
S Amberkar, L Kaderali
Algorithms for Molecular Biology 10 (6), 2015
92015
KnetMiner: a comprehensive approach for supporting evidence-based gene discovery and complex trait analysis across species [Internet]. bioRxiv. 2020 [cited 2020 Jul 22]. p …
K Hassani-Pak, A Singh, M Brandizi, J Hearnshaw, S Amberkar, ...
Publisher Full Text, 0
5
KnetMiner-Intelligent search and visualisation of connected data to explain complex traits and diseases
K Hassani-Pak, A Singh, M Brandizi, J Hearnshaw, S Amberkar, ...
BioRxiv, 2020.04. 02.017004, 2020
32020
Detecting Non-Uniform Clusters in Large-Scale Interaction Graphs
N Levtov, S Amberkar, ZM Frenkel, L Kaderali, Z Volkovich
Journal of Computational Biology 21 (2), 173-183, 2014
22014
GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation
B Contreras-Moreira, S Saraf, G Naamati, AM Casas, SS Amberkar, ...
Genome biology 24 (1), 223, 2023
12023
P4‐031: Integrative Network Analysis of Multiple Alzheimer's Disease Rnaseq Studies From the Accelerating Medicine Partnership‐Alzheimer's Disease Consortium
BA Logsdon, B Zhang, V Komashko, S Mostafavi, M Chen, TM Perumal, ...
Alzheimer's & Dementia 12, P1026-P1027, 2016
12016
Building pangene sets from plant genome alignments confirms presence-absence variation
B Contreras-Moreira, S Saraf, G Naamati, SS Amberkar, P Flicek, ...
bioRxiv, 2023.01. 03.520531, 2023
2023
Calling pangenes from plant genome alignments confirms presence-absence variation
B Contreras-Moreira, S Saraf, G Naamati, AM Casas, SS Amberkar, ...
2023
Novel molecules and target genes for vegetative heat tolerance in wheat
T Rose, M Wilkinson, C Lowe, J Xu, D Hughes, KL Hassall, ...
Plant‐Environment Interactions 3 (6), 264-289, 2022
2022
About diffcoexp
W Wei, S Amberkar, W Hide
2018
Package ‘diffcoexp’
W Wei, S Amberkar, W Hide, MW Wei, S GEOquery, ...
2018
Repeated Bisections Approach for Local Clustering of PPINs
Z Frenkel, S Amberkar, L Kaderali, Z Volkovich
Journal of Modern Mathematics Frontier Volume 2 (1), 2013
2013
A comparative functional RNA-interference screen identifies factors differentially required for lipid droplet homeostasis and life cycle of Flaviviridae members
G Alvisi, IK Stoeck, S Amberkar, NA Kiani, C Sommer, W Fischl, ...
41° Congresso Nazionale della SocietĄ Italiana di Microbiologia, 2013
2013
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Articles 1–20