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John Jumper
John Jumper
DeepMind
Verified email at google.com
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Cited by
Year
Highly accurate protein structure prediction with AlphaFold
J Jumper, R Evans, A Pritzel, T Green, M Figurnov, O Ronneberger, ...
Nature 596 (7873), 583-589, 2021
36432021
Atomic-level characterization of the structural dynamics of proteins
DE Shaw, P Maragakis, K Lindorff-Larsen, S Piana, RO Dror, ...
Science 330 (6002), 341-346, 2010
17862010
Improved protein structure prediction using potentials from deep learning
AW Senior, R Evans, J Jumper, J Kirkpatrick, L Sifre, T Green, C Qin, ...
Nature 577 (7792), 706-710, 2020
16712020
Highly accurate protein structure prediction for the human proteome
K Tunyasuvunakool, J Adler, Z Wu, T Green, M Zielinski, A Žídek, ...
Nature 596 (7873), 590-596, 2021
5962021
Oncogenic mutations counteract intrinsic disorder in the EGFR kinase and promote receptor dimerization
Y Shan, MP Eastwood, X Zhang, ET Kim, A Arkhipov, RO Dror, J Jumper, ...
Cell 149 (4), 860-870, 2012
3382012
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models
M Varadi, S Anyango, M Deshpande, S Nair, C Natassia, G Yordanova, ...
Nucleic acids research 50 (D1), D439-D444, 2022
3042022
Protein structure prediction using multiple deep neural networks in the 13th Critical Assessment of Protein Structure Prediction (CASP13)
AW Senior, R Evans, J Jumper, J Kirkpatrick, L Sifre, T Green, C Qin, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1141-1148, 2019
2132019
Protein complex prediction with AlphaFold-Multimer
R Evans, M O'Neill, A Pritzel, N Antropova, AW Senior, T Green, A Žídek, ...
BioRxiv, 2021
2102021
Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water
JA Riback, MA Bowman, AM Zmyslowski, CR Knoverek, JM Jumper, ...
Science 358 (6360), 238-241, 2017
1342017
De novo structure prediction with deeplearning based scoring
R Evans, J Jumper, J Kirkpatrick, L Sifre, T Green, C Qin, A Zidek, ...
Annu Rev Biochem 77 (363-382), 6, 2018
1202018
High accuracy protein structure prediction using deep learning
J Jumper, R Evans, A Pritzel, T Green, M Figurnov, K Tunyasuvunakool, ...
Fourteenth Critical Assessment of Techniques for Protein Structure …, 2020
1062020
Loss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculations
MC Baxa, EJ Haddadian, JM Jumper, KF Freed, TR Sosnick
Proceedings of the National Academy of Sciences 111 (43), 15396-15401, 2014
1032014
Effective gene expression prediction from sequence by integrating long-range interactions
Ž Avsec, V Agarwal, D Visentin, JR Ledsam, A Grabska-Barwinska, ...
Nature methods 18 (10), 1196-1203, 2021
782021
Applying and improving AlphaFold at CASP14
J Jumper, R Evans, A Pritzel, T Green, M Figurnov, O Ronneberger, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1711-1721, 2021
532021
Free-standing kinked silicon nanowires for probing inter-and intracellular force dynamics
JF Zimmerman, GF Murray, Y Wang, JM Jumper, JR Austin, B Tian
Nano letters 15 (8), 5492-5498, 2015
472015
Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours
JM Jumper, NF Faruk, KF Freed, TR Sosnick
PLoS computational biology 14 (12), e1006578, 2018
282018
Response to comment on “Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water”
JA Riback, MA Bowman, A Zmyslowski, CR Knoverek, J Jumper, EB Kaye, ...
Science 361 (6405), eaar7949, 2018
272018
Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics
JM Jumper, NF Faruk, KF Freed, TR Sosnick
PLoS computational biology 14 (12), e1006342, 2018
252018
Rotational Relaxation in ortho-Terphenyl: Using Atomistic Simulations to Bridge Theory and Experiment
MP Eastwood, T Chitra, JM Jumper, K Palmo, AC Pan, DE Shaw
The Journal of Physical Chemistry B 117 (42), 12898-12907, 2013
182013
Inferring a continuous distribution of atom coordinates from cryo-EM images using VAEs
D Rosenbaum, M Garnelo, M Zielinski, C Beattie, E Clancy, A Huber, ...
arXiv preprint arXiv:2106.14108, 2021
132021
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