|Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes|
X Xu, X Liu, S Ge, JD Jensen, F Hu, X Li, Y Dong, RN Gutenkunst, L Fang, ...
Nature biotechnology 30 (1), 105, 2012
|A comparison of non-integrating reprogramming methods|
TM Schlaeger, L Daheron, TR Brickler, S Entwisle, K Chan, A Cianci, ...
Nature biotechnology 33 (1), 58, 2015
|The DNA methylome of human peripheral blood mononuclear cells|
Y Li, J Zhu, G Tian, N Li, Q Li, M Ye, H Zheng, J Yu, H Wu, J Sun, H Zhang, ...
PLoS biology 8 (11), e1000533, 2010
|Epigenomic reprogramming during pancreatic cancer progression links anabolic glucose metabolism to distant metastasis|
OG McDonald, X Li, T Saunders, R Tryggvadottir, SJ Mentch, ...
Nature genetics 49 (3), 367, 2017
|Single base–resolution methylome of the silkworm reveals a sparse epigenomic map|
H Xiang, J Zhu, Q Chen, F Dai, X Li, M Li, H Zhang, G Zhang, D Li, Y Dong, ...
Nature biotechnology 28 (5), 516, 2010
|On the origin of new genes in Drosophila|
Q Zhou, G Zhang, Y Zhang, S Xu, R Zhao, Z Zhan, X Li, Y Ding, S Yang, ...
Genome research 18 (9), 1446-1455, 2008
|Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression|
X Li, J Zhu, F Hu, S Ge, M Ye, H Xiang, G Zhang, X Zheng, H Zhang, ...
BMC genomics 13 (1), 300, 2012
|Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin|
AR Vandiver, RA Irizarry, KD Hansen, LA Garza, A Runarsson, X Li, ...
Genome biology 16 (1), 80, 2015
|GeMes, clusters of DNA methylation under genetic control, can inform genetic and epigenetic analysis of disease|
Y Liu, X Li, MJ Aryee, TJ Ekström, L Padyukov, L Klareskog, A Vandiver, ...
The American Journal of Human Genetics 94 (4), 485-495, 2014
|A selective phenelzine analogue inhibitor of histone demethylase LSD1|
P Prusevich, JH Kalin, SA Ming, M Basso, J Givens, X Li, J Hu, MS Taylor, ...
ACS chemical biology 9 (6), 1284-1293, 2014
|Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila|
S Yang, JR Arguello, X Li, Y Ding, Q Zhou, Y Chen, Y Zhang, R Zhao, ...
PLoS genetics 4 (1), e3, 2008
|Short homologous sequences are strongly associated with the generation of chimeric RNAs in eukaryotes|
X Li, L Zhao, H Jiang, W Wang
Journal of molecular evolution 68 (1), 56-65, 2009
|Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver|
X Li, Y Liu, T Salz, KD Hansen, A Feinberg
Genome Research 26 (12), 1730-1741, 2016
|Comparative methylomics between domesticated and wild silkworms implies possible epigenetic influences on silkworm domestication|
H Xiang, X Li, F Dai, X Xu, A Tan, L Chen, G Zhang, Y Ding, Q Li, J Lian, ...
BMC genomics 14 (1), 646, 2013
|Genome and Comparative Transcriptomics of African Wild Rice Oryza longistaminata Provide Insights into Molecular Mechanism of Rhizomatousness and Self-Incompatibility|
Y Zhang, S Zhang, H Liu, B Fu, L Li, M Xie, Y Song, X Li, J Cai, W Wan, ...
Molecular Plant 8 (11), 1683-1686, 2015
|Analysis of elite variety tag SNPs reveals an important allele in upland rice|
J Lyu, S Zhang, Y Dong, W He, J Zhang, X Deng, Y Zhang, X Li, B Li, ...
Nature Communications 4, 2138, 2013
|A genomic perspective on the important genetic mechanisms of upland adaptation of rice|
J Lyu, B Li, W He, S Zhang, Z Gou, J Zhang, L Meng, X Li, D Tao, ...
BMC plant biology 14 (1), 160, 2014
|Comparative transcriptome analyses on silk glands of six silkmoths imply the genetic basis of silk structure and coloration|
Y Dong, F Dai, Y Ren, H Liu, L Chen, P Yang, Y Liu, X Li, W Wang, ...
BMC genomics 16 (1), 203, 2015
|Functional consequences of new exon acquisition in mammalian chromodomain Y-like (CDYL) genes|
X Li, J Liang, H Yu, B Su, C Xiao, Y Shang, W Wang
Trends in Genetics 23 (9), 427-431, 2007
|Arioc: GPU-accelerated alignment of short bisulfite-treated reads|
R Wilton, X Li, AP Feinberg, AS Szalay, B Berger